Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1818g00002 ATGGGAAAGCGCTCCTTTCAAGAATCTCTAAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTAGGCCATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGGCTATCATACGGTCCAGCAGCCCCAATTTTCCTCTTTCTTGTTCAGTGGACAGATTACCGTCTGGCTGGTGCTCTGGGTTTGCTGAGGATTCTAATTTATGTGACTTATGGAAATGGGAAGACTACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACACTGTTATATTTCCTGCTTTATTACAACTTCAGAAAGGTATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGATGTTAGATACCGAAGGAAGATTGAGTTCGAAGAGAGTAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGCGGGGTTTGCTTGGAGGTTAAAGCAAAAGTTGTGCTGCCTAATTGCTGCCACTATATGTGCTTGAAGTGCTACAGAGATTGGTGTGTAAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAACTCTGGGGACCTTTGGATTTACACAGACAAGAATGATATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTATGTACTTAGAGAAGTTGCCTCTTATTGTTCCAGACCCCAGACATGTGTCCTATGATCCATTTATAAGGTGA 732 0.4085 MGKRSFQESLKALEADIQYANTLALGHPRDKDGGCYQMRLSYGPAAPIFLFLVQWTDYRLAGALGLLRILIYVTYGNGKTTMSIYERKASIRQFYTVIFPALLQLQKGITDLEERKQKEVYDVRYRRKIEFEESRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCVRSQSCPFCRDSLKRVNSGDLWIYTDKNDIVDVGTIFKENCKMLFMYLEKLPLIVPDPRHVSYDPFIR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1818g00002 243 SMART ring_2 147 184 IPR001841 -
Gabi1818g00002 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Gabi1818g00002 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 190 - -
Gabi1818g00002 243 PANTHER RING FINGER PROTEIN 41, 151 4 235 - -
Gabi1818g00002 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 194 IPR013083 -
Gabi1818g00002 243 FunFam RING/U-box superfamily protein 125 194 - -
Gabi1818g00002 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Gabi1818g00002 243 SUPERFAMILY RING/U-box 136 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1818g00002 Gabi-Chr1818 11253 13864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1818g00002 111 188 C3H Transcription Factor Family AT5G41350 29.630 6.77e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1818g00002 - - gmx:100808567 446.817