Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1818g00001 ATGGGAAAGCGCTCCTTTCAAGAATCTCTAAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGTATGTCTCTCTCTTCTTATCTCTCAATTTTTATCTATTTTTTTTTGTTTTTTTTGGGGCATTAGGCCATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGGCTATCATACGGTCCAGCAGCCCCAATTTTCCTCTTTCTTGTTCAGTGGACAGATTACCGTCTGGCTGGTGCTCTGGGTTTGCTGAGGATTCTAATTTATGTGACTTATGGAAATGGGAAGACTACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACACTGTTATATTTCCTGCTTTATTACAACTTCAGAAAGGTATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGATGTTAGATACCGAAGGAAGATTGAGTTCGAAGAGAGTAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGCGGGGTTTGCTTGGAGGTTAAAGCAAAAGTTGTGCTGCCTAATTGCTGCCACTATATGTGCTTGAAGTGCTACAGAGATTGGTGTGTAAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAACTCTGGGGACCTTTGGATTTACACAGACAAGAATGATATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTATGTACTTAGAGAAGTTGCCTCTTATTGTTCCAGACCCCAGACATGTGTCCTATGATCCATTTATAAGGTGA 789 0.3967 MGKRSFQESLKALEADIQYANTLYVSLFLSLNFYLFFFVFFGALGHPRDKDGGCYQMRLSYGPAAPIFLFLVQWTDYRLAGALGLLRILIYVTYGNGKTTMSIYERKASIRQFYTVIFPALLQLQKGITDLEERKQKEVYDVRYRRKIEFEESRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCVRSQSCPFCRDSLKRVNSGDLWIYTDKNDIVDVGTIFKENCKMLFMYLEKLPLIVPDPRHVSYDPFIR 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1818g00001 262 Pfam Zinc finger, C3HC4 type (RING finger) 163 209 - -
Gabi1818g00001 262 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Gabi1818g00001 262 SUPERFAMILY RING/U-box 155 209 - -
Gabi1818g00001 262 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Gabi1818g00001 262 PANTHER RING FINGER PROTEIN 41, 151 4 254 - -
Gabi1818g00001 262 SMART ring_2 166 203 IPR001841 -
Gabi1818g00001 262 FunFam RING/U-box superfamily protein 144 213 - -
Gabi1818g00001 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 213 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1818g00001 Gabi-Chr1818 11253 13864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1818g00001 86 207 C3H Transcription Factor Family AT5G41350 25.185 6.70e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1818g00001 - - gmx:100808567 433.335