LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1816g00002	ATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCAGCTTCCTCGTCGCTCAACGTCCTCGGATTAACGATTGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAACTGAATCTCTCACCGGAGCTTTTGAACGGACTCTACGTGGAGATGAAGTTCCATAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGGTCGCACACGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACATGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGTGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGGCTTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTCAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAAGTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTCAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAATGAAAAAAGATTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGACATTCCTGCCGAGGAGCTTGCTAGGAGGACTGGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCCAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGTATTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAACGCATGATGACTTGGTACAGAAAGGGCGCAAGATTGAGTCCTTAACGGCCGAGATCAGGCGGTTGGGTAAGGAAATTAGTGACCTGAAGGCAACCAATAAAACTTTATCTGACAGCAACCAAGAACTGAAGGGGGCTAGTGACGTGGTGCAACGCCTGTCGCAGGAGAAGGATGACTTATCAAAGTTATTGGATGAGTCTTCAACCGAGAAAAAGGGGCTCCAGGCGGCGAATAGCCAGTTGACTGCCGAGAAAGCTGCCCTTCAGTCGGAGAAGGATGCGTTATCTGTTGAGTTGACTGGCGTATGTGGTAACTTGCATGCCGCCCAAGAGGATTTTAAAAAAGCTTCTAGGCGAGTACAGGAGCTGGAGCTTGGCTTGCCTTCAGTTTTTTATGATTCTTTTAACAACGCCCTGAATCAGGTTCAATTTCGATATCCTAAGATAGATGCTTCGGGCTTGAGTGCCGATTATGTGGTGGAAGGGAAACGCCTGCTTCATAAACTCTATAATGGCGAGACGACTGTGATAGAGGAAGGGCCTGACTCTGATGAGGAAGAGGATGATGTAGAGGAAGAATCAGCCAAGTTCGGTGACTCACCTTTAGGCGACCACCATGTGCTGAGCGGAGAGCAACCCGTAGATGGAGAACCTACTGACGCCGTAGAGATCCCGTCGTGCGGATCCCATCGTTGGCGATGGTGTTATTGGCAACACTTCCTTTGGAAGGTATTGGTGAGGAAGCTTCATCTAGGAATAACGTTGAAGACACTGCTGGGGAGGACGCCACTGAGGGGGTCTCAATAG	2172	0.4705	MAEPSTAETTSASDAHPPAPASSSLNVLGLTIDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLNGLYVEMKFHKPSKIQAVTLPMILNPPNRDLVAHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYMGISSECAIPADSSDALPIAKRAPIMAQVVIGTPGTINKWMAYKKLGVTRLKILVFDEADQMLAQDGFKDDSLRIMKGIEKVNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEMKKDYILEIGENLGQTIIFVRTRNSAKMLHKSLVEIGENLGQTIIFVRTRNSAKMLHKSLVVAPVVAPVAPSKGVDKGKRKVVNIVKRKVRSAADIPAEELARRTGGPVIKDVQENAQSLAVNPSAPEVIPPKPTYSGRKRVASEDLSSPKGAKTHDDLVQKGRKIESLTAEIRRLGKEISDLKATNKTLSDSNQELKGASDVVQRLSQEKDDLSKLLDESSTEKKGLQAANSQLTAEKAALQSEKDALSVELTGVCGNLHAAQEDFKKASRRVQELELGLPSVFYDSFNNALNQVQFRYPKIDASGLSADYVVEGKRLLHKLYNGETTVIEEGPDSDEEEDDVEEESAKFGDSPLGDHHVLSGEQPVDGEPTDAVEIPSCGSHRWRWCYWQHFLWKVLVRKLHLGITLKTLLGRTPLRGSQ	723

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1816g00002	723	SMART	ultradead3	85	289	IPR014001	-
	Gabi1816g00002	723	Coils	Coil	491	553	-	-
	Gabi1816g00002	723	MobiDBLite	consensus disorder prediction	1	59	-	-
	Gabi1816g00002	723	MobiDBLite	consensus disorder prediction	630	675	-	-
	Gabi1816g00002	723	MobiDBLite	consensus disorder prediction	419	459	-	-
	Gabi1816g00002	723	Coils	Coil	561	581	-	-
	Gabi1816g00002	723	Gene3D	-	44	279	IPR027417	-
	Gabi1816g00002	723	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	65	94	IPR014014	GO:0003724
	Gabi1816g00002	723	Coils	Coil	460	487	-	-
	Gabi1816g00002	723	Gene3D	-	449	598	-	-
	Gabi1816g00002	723	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	52	270	IPR027417	-
	Gabi1816g00002	723	PANTHER	RNA HELICASE	53	337	-	-
	Gabi1816g00002	723	MobiDBLite	consensus disorder prediction	445	459	-	-
	Gabi1816g00002	723	CDD	DEADc_DDX19_DDX25	72	271	-	-
	Gabi1816g00002	723	MobiDBLite	consensus disorder prediction	633	649	-	-
	Gabi1816g00002	723	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	99	275	IPR014001	-
	Gabi1816g00002	723	MobiDBLite	consensus disorder prediction	1	30	-	-
	Gabi1816g00002	723	Pfam	DEAD/DEAH box helicase	91	262	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1816g00002	Gabi-Chr1816	8083	14667	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1816g00002	58	330	Eukaryotic Initiation Factors Gene Family	AT1G72730	32.632	5.35e-31	124

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1816g00002	K18655		-	qsa:O6P43_010208	494.967