Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1815g00006 ATGAATTCACTTGGCTCCCTAAACTCTCCTCCCAACTTCACAATGTTCGAGTGCCTTCCTGATGCCATAGTGCGCGAAATACTTCTTCGCTTACCTCTCAAAAGCATTGGAAAATGCATGTCAGTGTGCAAATCATTGAATACAATGATAAAGAGTCCCACATTCATATCCTCACACCTCAAACATTCTCTCTTAAACCCCTCCCTTCCTCTCTTCCTTCTCCGCGATTTTTACCCTTCATATCCCTCTTATAAGCAGAACTATTCTTTATGGTCCTCTTCTTTTCCCAAAATAGCAAATCTCGAATGCTCATTTTGGGTTCCCGATAGTAAATTCCTCGGCTTTGTTGGTGCCCTCAACGGTATTGTTTGTCTCTTTGATTATGACACAGATGATATCATTCTCTTGAACCCTTCGATACGAAGACACCTCCAACTCCCAAAGTCAATTGTGCCGGAGTCATTTCTCTTGCATCCTGGTTGTTACGTTCTCGGGTTTGGGTTTGATTCTAAAAAGAATGATTTCAAGGTCGTGCGGATATATCATCCTACATCTGTCTTCATGATTCCTCCAAAGGTTGAGTTGTATTCCCTCAACGAGGGTCACCCTTGGAGGGTCATTGATGCGTCATACATTGACTTAAGCATAGATTATTGCTCTCAACAGGTATTTTTCCACGGAAATGTGTATTGGCTTGCCTCCCAAGGAACCCAAAGTGCTCCTTTTCAAAGTAATTACATATTGATGTTCGATATGGTGGAGGAGAAGTTCAATAGGATGGAGCTTCCAAATGAGTTGGTTACTGTGTCTATTAGGAACTTGGTTGTTACTATGATTGAGGGTTGCCTTTCGCTTATAGAGAACCCCTCGCTTGAAAAGACTAACTGCTGCATATGGATGAGAAAAGAAGAGTCATGGACTAAGATGTATAATATTTATTTAGAGGAAGGGTTTCAAAAGCTATTGGGACCGAGTCCTACAAGTGAGGTTTTAGCACTTCCATGCCCATATGGAGAAACAGTTATGTCCTTGCATTCATTTGATCTCAAGAGCAAAGAGATGAGGGACCTTGGGATCAGTCGTGCAAGAAAAAGCTTATATGCTAGTTATTTCAGAGAAAGCTTGGTTTTGCTTGACCAAGAAAGCAATACTGCGACTTCATTTTGGAGCCAAGATGATGAATCTCCGGAAGTTGAAAGATGGTGGACATAG 1212 0.4158 MNSLGSLNSPPNFTMFECLPDAIVREILLRLPLKSIGKCMSVCKSLNTMIKSPTFISSHLKHSLLNPSLPLFLLRDFYPSYPSYKQNYSLWSSSFPKIANLECSFWVPDSKFLGFVGALNGIVCLFDYDTDDIILLNPSIRRHLQLPKSIVPESFLLHPGCYVLGFGFDSKKNDFKVVRIYHPTSVFMIPPKVELYSLNEGHPWRVIDASYIDLSIDYCSQQVFFHGNVYWLASQGTQSAPFQSNYILMFDMVEEKFNRMELPNELVTVSIRNLVVTMIEGCLSLIENPSLEKTNCCIWMRKEESWTKMYNIYLEEGFQKLLGPSPTSEVLALPCPYGETVMSLHSFDLKSKEMRDLGISRARKSLYASYFRESLVLLDQESNTATSFWSQDDESPEVERWWT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1815g00006 403 ProSiteProfiles F-box domain profile. 13 59 IPR001810 GO:0005515
Gabi1815g00006 403 Pfam F-box domain 16 53 IPR001810 GO:0005515
Gabi1815g00006 403 SMART fbox_2 19 59 IPR001810 GO:0005515
Gabi1815g00006 403 NCBIfam F-box protein interaction domain 118 313 IPR017451 -
Gabi1815g00006 403 Gene3D - 6 104 - -
Gabi1815g00006 403 PANTHER BNACNNG10540D PROTEIN 15 341 - -
Gabi1815g00006 403 SUPERFAMILY F-box domain 8 96 IPR036047 GO:0005515
Gabi1815g00006 403 Pfam F-box associated 223 315 IPR006527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1815g00006 Gabi-Chr1815 62462 63786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1815g00006 187 300 Carbohydrate Esterase AT1G25141 28.070 5.45e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1815g00006 - - aprc:113873848 257.684