Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi180g00010 ATGGGATTGCAGCGAGGATTGGCACTTAGTGCGGTTATAATGTTGCTGTTGGTACAGTTAACGATGGGTTTAAGTTCTGAAACCGAATGGGTTGCGTTATTTAAGCTTCGTTCTTCGTTGGGGATAAGGGGAAAGGAATGGCCCTTAAAAGCCGAACCGTGCCTGAACTGGACCGGGGTTCGGTGCCGGAACGGTCGAGTCGTTGGGATAAACGTGACCGGTTTGAAGCGAACCCGAACCGGTCGTCTTCACCCGAACTTCGAAGTGGATTCCCTTACCAATTTAACACTATTGGAGTCTTTCAACGCTTCTGGGTTCATGCTCAATGGGTCAATTCCCGAGTGGTTTGGTCAGAGCCTTGGTGCACTCCAAGTGCTTGATCTAAGGTCTTGTTCCATAACGGGTGTGATTCCTGATTCACTTGGGGGTTTGAGTGTGTTGAAGTCTTTGTTCCTTTCAGGGAATAGTCTTACTGGTAGAATGCCTCCAACATTGGGATTGTTATCTGGGTTATCTGTTCTTGACCTCTCTAGGAACTCGCTTTCAGGAACAGTGCCTAACTCTTTGTCTAAACTTGGTAACCTTACAAGGCTTGATCTTTCTTCTAATTTCTTATCTGGGTCTATTCCACATGAACTGGGTGGCCTTTCAAATCTCCAAATTCTGAACCTTTCTAATAGTGCCCTCACTGCTTCTGTTCCCCCTCAACTGGGTAACCTTTCCAAGTTGGTTGAGCTTGACCTTAGCATGAATTTTCTGTCTGGGTCATTGCCGGGTAGTTTGTTTTCTTCTACCCTTGTTGCCCTTCAAGTTCTCATTCTCAGTGAGAATTTATTTCATGGTTCTCTTCCTGCTAAGATGTGGTCAATGCCCAGCTTGCACTTTCTTGATGTATCCAGCAACAATCTCACTGGTCCACTGCCAAAGTTCTCTAATAACGTTAGTTCTACTGGTGCCATATTCAATCTCTCAAACAATTTGTTCTATGGATCTCTGTCTCTGAATACTTCGTTGAACAAGTTTAAAATGATTGATTTGTCTGGTAATTATTTACAAGGTGAGGTGCCAGGTGGTGGTCTTAGTAATGTAACTCTAGCTAGAAATTGCCTACAGATGATTTCAAACCAGAGGGGTTTGGAAGATTGTAGACTGTTTTACGTTCGGAGAAATTTACACTTTGATCCTGGTGAGCAAGAACCAATTCAACCCCCATTCCTAGGAAAGTCCAGGAGCAACAAATCAGTTATATTTATACTGGCAGGTATATTTGGTGGGCTTGGCTTAACTGTGCTTCTGGTATTGGTCCTCTTACTGGTTCTAAAACAATGTCATAAACATAATAGCTTGGTGATTCAAAGGGGGACCGTAGAAGGGGGACCTGTTCCAGATGGGGGAAGACCTACTCCTCCTAAGGATCCTGTCTTTGTAACTGGAGTGGGAGAATCATTTACTTTTGAGCAAATTGTTCGTTTGACTGGCAATTTTTCTGAAGCAAATATCATAAAGCATGGTCGTTCTGGAGACCTCTACTGGGGAGTCTTGGAAAGTGGAGCAACTGTGGTTGTCAAAAAGGTAGATTTGAATTTATTTAAGAGAGAATCATACATTGTGGAATTGGGATTATTAAGCAAGGTTTCACATGCAAGATTGGTCCCAATCCTGGGACAGTGCTTGGAGAATGAGAATGAGAAATGTATAGTTTACAAGTATATGCCAAATGGAGATTTGGCTACTTCATTGCACAAAGTCACTAGTTCAGATGGTAAATTACAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCTTACCTACACGAGTGTAGCCCTCCCCTTGTTCACAGAGATGTCCAAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGAGACTTGGAAGTTTGAGTGAGGTTACTGCCCAAGAAGATCTTCATCAGAATGTCATCTCAAGACTTTTCAGCAAGCCACCATCTTCTAATCAAGTCAACTCTGGTACATCATCTGTGACATGCGCCGACGATGTCTACTGTTTTGGGAAGATTTTACTCGAGCTAGTTACTGGTAATCTTCATGTCAGCAAATCAGATGATGCCGCCGCAAAAGAGTGGTTAGAGCAAACCCTGTCTTACATAAGCATATATGATAAAGAACGTGTGACTAAGATTGTTGATCCATCTTTGATCGTGGATGAGGACCTATTGGATGAGGTATGGGCTATGGCAATTGTGGCCATGTCATGTCTGAATCCCAAGCCTTCCAAGCGTCCTCCTATGAGATATGTCCTCAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGAAAATCCTAGCTCGGCAAGGTTGAGAACAACCTCATCTAGGAGATCTTGGAGCACTGCATTCTTTGGTAGTTGGAGACACAGTTCATCAGAGAGTGCTACTGCCACAGGGAATGCAAACAAGGAGGGTACTAGTGGCTTTAAACAATCAGGAAGAGTAGGTTCTCAAGGTAGTACTGGAAATGATCACTCATCTTCCAATAAAAGATCATCCAATGAAATTTTCCCTGAACCATTGGATATGCAAGATGTAGAGACTGGAGAGGCAAGATGA 2616 0.4308 MGLQRGLALSAVIMLLLVQLTMGLSSETEWVALFKLRSSLGIRGKEWPLKAEPCLNWTGVRCRNGRVVGINVTGLKRTRTGRLHPNFEVDSLTNLTLLESFNASGFMLNGSIPEWFGQSLGALQVLDLRSCSITGVIPDSLGGLSVLKSLFLSGNSLTGRMPPTLGLLSGLSVLDLSRNSLSGTVPNSLSKLGNLTRLDLSSNFLSGSIPHELGGLSNLQILNLSNSALTASVPPQLGNLSKLVELDLSMNFLSGSLPGSLFSSTLVALQVLILSENLFHGSLPAKMWSMPSLHFLDVSSNNLTGPLPKFSNNVSSTGAIFNLSNNLFYGSLSLNTSLNKFKMIDLSGNYLQGEVPGGGLSNVTLARNCLQMISNQRGLEDCRLFYVRRNLHFDPGEQEPIQPPFLGKSRSNKSVIFILAGIFGGLGLTVLLVLVLLLVLKQCHKHNSLVIQRGTVEGGPVPDGGRPTPPKDPVFVTGVGESFTFEQIVRLTGNFSEANIIKHGRSGDLYWGVLESGATVVVKKVDLNLFKRESYIVELGLLSKVSHARLVPILGQCLENENEKCIVYKYMPNGDLATSLHKVTSSDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVTAQEDLHQNVISRLFSKPPSSNQVNSGTSSVTCADDVYCFGKILLELVTGNLHVSKSDDAAAKEWLEQTLSYISIYDKERVTKIVDPSLIVDEDLLDEVWAMAIVAMSCLNPKPSKRPPMRYVLKALENPLKIVREENPSSARLRTTSSRRSWSTAFFGSWRHSSSESATATGNANKEGTSGFKQSGRVGSQGSTGNDHSSSNKRSSNEIFPEPLDMQDVETGEAR 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi180g00010 871 ProSiteProfiles Protein kinase domain profile. 495 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi180g00010 871 MobiDBLite consensus disorder prediction 810 854 - -
Gabi180g00010 871 Pfam Leucine rich repeat 242 303 IPR001611 GO:0005515
Gabi180g00010 871 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515
Gabi180g00010 871 Pfam Leucine Rich Repeat 123 144 IPR001611 GO:0005515
Gabi180g00010 871 Pfam Leucine Rich Repeat 171 192 IPR001611 GO:0005515
Gabi180g00010 871 SMART LRR_typ_2 120 143 IPR003591 -
Gabi180g00010 871 SMART LRR_typ_2 144 167 IPR003591 -
Gabi180g00010 871 SMART LRR_typ_2 240 264 IPR003591 -
Gabi180g00010 871 SMART LRR_typ_2 168 191 IPR003591 -
Gabi180g00010 871 SMART LRR_typ_2 192 215 IPR003591 -
Gabi180g00010 871 SMART LRR_typ_2 216 239 IPR003591 -
Gabi180g00010 871 SMART LRR_typ_2 266 290 IPR003591 -
Gabi180g00010 871 FunFam Predicted protein 467 570 - -
Gabi180g00010 871 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 210 307 - -
Gabi180g00010 871 MobiDBLite consensus disorder prediction 810 871 - -
Gabi180g00010 871 FunFam Putative LRR receptor-like serine/threonine-protein kinase 571 792 - -
Gabi180g00010 871 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 118 209 - -
Gabi180g00010 871 SUPERFAMILY Protein kinase-like (PK-like) 474 772 IPR011009 -
Gabi180g00010 871 Pfam Protein tyrosine and serine/threonine kinase 501 770 IPR001245 GO:0004672|GO:0006468
Gabi180g00010 871 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 140 263 IPR046959 -
Gabi180g00010 871 SUPERFAMILY L domain-like 50 310 - -
Gabi180g00010 871 Gene3D Transferase(Phosphotransferase) domain 1 571 793 - -
Gabi180g00010 871 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Gabi180g00010 871 Gene3D Ribonuclease Inhibitor 263 367 IPR032675 -
Gabi180g00010 871 Gene3D Ribonuclease Inhibitor 185 262 IPR032675 -
Gabi180g00010 871 Gene3D Phosphorylase Kinase; domain 1 472 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi180g00010 Gabi-Chr180 114291 118892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi180g00010 28 663 Miscellaneous Gene Families AT2G16250 48.653 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Gabi180g00010 PK_Tyr_Ser-Thr 1.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi180g00010 - - gmx:100815313 1195.26