Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1807g00004 ATGGCAGATCTTGCTAGCTACGGAAATGCCGACCGTGACCTCGAGCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAGTATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCTTTTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTGTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTTTCTGCGCCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGGTGGTCTCAAAGCACTGATATCTTCTGGGCAAGGTGATCGTTCAACCAGTGCATCAAGAGACATCAGTTCTCCTGACGTTTCTCTGAGTCTTCCAAATACTTCACCAAAGTCCTTTCGCCCTGACAATACCTTAAATTCTGAAAGGTCACATGCACCATCAGTCCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTGTTCGTGTTAGTGTGTCAAGTGCCCCTAGCACATCTAGTCATGGATCTGCACCTGATGAGTATGATGCTCTGGGAGATGTATACTTATGGGGGGAGGTTATATGTGAAAACCTGAGAGTTGGTGCTGATAAAAATGTCAATTATTTCAGCCTGGGGGCAGATGTGCTTCTCCCCAGACCACTGGAATCAAATGTAGTTCTGGATGTACAACGTATAGCATGTGGTGTTAGACATTCTTCTCTTGTCACTAGGCAAGGTGAAGTTTTTACATGGGGGGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTGGAGGGACTTCAGGTTGCTTTTGTTGCTTGTGGTCCATGGCATACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGCGATGGAACATTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCCAGTGCTAGTGTATCATCAGGTAAATTATTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGACAAGGAGGCACGGCTTGAACCTACTTGTGTGCCTGCGCTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGTAGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAACTGCCATGCTTGGTTGGAGACAAGATTGCTGGGGATTTCGTAGAAGAAATTGCATGTGGTTCATATCATGTGGCTGTATTAACATCAAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATAGAAAAACACCAACTCTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCATGCTATTCTGCTGCCGTATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGACATTTGGCTTCACCAGAAAGAGGCATAATTGTTATAATTGTGGACTTGTTCACTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCCCTGGCTCCTGATCCGGGCAAGCCATATCGCGTGTGTGATTCTTGTCATGCAAAATTGAACAAAGTTGCAGAAACTAGCAATAATAATCGGAGGAATGCTTTGCCTCGTCTATCAGGTGAAAACAAGGACAGGTTAGACAGGTCTGAGCTGAAATTGTCCAAGTCTGTAATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCCAAACAAGGAAAGAAGGCCGATACGTTCTCACTGGTTCGCACCTTACAAGCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTGTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCGGCTACCCCGATTCCAACAACATCGGGACTTTCGTTCTCCAAAAATGTTGCTGATAGTTTGAATAAAACCAATGAACTTTTAAATCAAGAAGTGCAGAAGTTATGTGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATCAGAGCTTCAAAAGTCAGTAAGAAAGACTCAAGAAGCTATGGCCCTGGCTGCTGAGGAATCTTCTAAGTCTGAAGCTACAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGACTAAGAAGCTTCCTCCTGGAGTTTATGATGATGAGAACATTAGACCAGCTTCCCTATCAAATGGTCATGAGCCAAATGCCGTCCGATATTCAGATTCAAACAGCGAGCAGCACTCGAGGGCAGAGTTAATCAGTGGCTCTAGTATGGCCTCCATAGGACTTGAATCCTCACTGTTGGATAGAACTGTGGGGAATTCGCCAGGAACCAATGTAACTAATCTTCACCAGCAAATCCGGGGCCTTGCGACCTCTAATGGGACTAATAATCATCCAGATGTTAGATTGCCAAATGGTGATGGTGTGATTCAGGCAAGAAGCAGCAGTAGCACGTCAGATACAGTTGAGGGTAGGGATTCCGGGCATTTCCATGACGATGAGAGTGGTTTGAGATCGAGGAATCCTGCACCTTCTGCTTATAATATTCAAATTGAAGCGGAATGGATTGATCAGTATGAACCTGGTGTCTATATAACACTTGTGACCCTGCATGATGGAACAAGGGATCTGAAGCGAGTGCGCTTCAGCCGGAGGAGATTCGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGATAAGGTATATGAAAAATACAATGTTCGCAGCTCGGAAAAGTCTTCCGGCCAAGCAGCATGTAGGTCAGAGAGAGCTGGTTTGCCTGTTTCCCATAGCTAG 3285 0.4463 MADLASYGNADRDLEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESFLIWISSSGERSLKLSSVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIGGLKALISSGQGDRSTSASRDISSPDVSLSLPNTSPKSFRPDNTLNSERSHAPSVPTNMQVKGSGSDAVRVSVSSAPSTSSHGSAPDEYDALGDVYLWGEVICENLRVGADKNVNYFSLGADVLLPRPLESNVVLDVQRIACGVRHSSLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIATQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGDFVEEIACGSYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSCYSAAVCLHKWVSGAEQSQCSACRQTFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCHAKLNKVAETSNNNRRNALPRLSGENKDRLDRSELKLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTLQAPSLLQLKDVVLSTAVDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKNVADSLNKTNELLNQEVQKLCAQVESLRQRCELQESELQKSVRKTQEAMALAAEESSKSEATKEVIKSLTAQLKDLTKKLPPGVYDDENIRPASLSNGHEPNAVRYSDSNSEQHSRAELISGSSMASIGLESSLLDRTVGNSPGTNVTNLHQQIRGLATSNGTNNHPDVRLPNGDGVIQARSSSSTSDTVEGRDSGHFHDDESGLRSRNPAPSAYNIQIEAEWIDQYEPGVYITLVTLHDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRSSEKSSGQAACRSERAGLPVSHS 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1807g00004 1094 Pfam FYVE zinc finger 596 662 IPR000306 GO:0046872
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 321 IPR000408 -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 970 984 - -
Gabi1807g00004 1094 Coils Coil 852 872 - -
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 322 376 IPR000408 -
Gabi1807g00004 1094 FunFam PH, RCC1 and FYVE domains-containing protein 1 430 601 - -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 1071 1094 - -
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Gabi1807g00004 1094 SUPERFAMILY RCC1/BLIP-II 208 597 IPR009091 -
Gabi1807g00004 1094 Gene3D - 156 428 IPR009091 -
Gabi1807g00004 1094 Gene3D - 429 593 IPR009091 -
Gabi1807g00004 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 675 IPR013083 -
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 544 595 IPR000408 -
Gabi1807g00004 1094 Gene3D - 13 130 IPR011993 -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 951 1004 - -
Gabi1807g00004 1094 SUPERFAMILY PH domain-like 14 123 - -
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 209 269 IPR000408 -
Gabi1807g00004 1094 SMART fyve_4 592 663 IPR000306 GO:0046872
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 428 IPR000408 -
Gabi1807g00004 1094 Pfam Transcription factor BRX N-terminal domain 847 879 IPR027988 -
Gabi1807g00004 1094 PRINTS Chromosome condensation regulator RCC1 signature 539 560 IPR000408 -
Gabi1807g00004 1094 PRINTS Chromosome condensation regulator RCC1 signature 272 288 IPR000408 -
Gabi1807g00004 1094 PRINTS Chromosome condensation regulator RCC1 signature 363 379 IPR000408 -
Gabi1807g00004 1094 PRINTS Chromosome condensation regulator RCC1 signature 481 499 IPR000408 -
Gabi1807g00004 1094 PRINTS Chromosome condensation regulator RCC1 signature 322 338 IPR000408 -
Gabi1807g00004 1094 PRINTS Chromosome condensation regulator RCC1 signature 379 393 IPR000408 -
Gabi1807g00004 1094 ProSiteProfiles BRX domain profile. 1014 1069 IPR013591 -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 125 202 - -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 756 789 - -
Gabi1807g00004 1094 Pfam Transcription factor regulating root and shoot growth via Pin3 1013 1068 IPR013591 -
Gabi1807g00004 1094 CDD PH_PLC_plant-like 12 124 - -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 877 913 - -
Gabi1807g00004 1094 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 415 425 IPR000408 -
Gabi1807g00004 1094 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 869 - -
Gabi1807g00004 1094 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 600 662 IPR017455 -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 985 999 - -
Gabi1807g00004 1094 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 363 373 IPR000408 -
Gabi1807g00004 1094 SUPERFAMILY FYVE/PHD zinc finger 596 670 IPR011011 -
Gabi1807g00004 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 322 373 IPR000408 -
Gabi1807g00004 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 439 486 IPR000408 -
Gabi1807g00004 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 491 540 IPR000408 -
Gabi1807g00004 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 270 318 IPR000408 -
Gabi1807g00004 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 377 425 IPR000408 -
Gabi1807g00004 1094 Pfam Regulator of chromosome condensation (RCC1) repeat 545 592 IPR000408 -
Gabi1807g00004 1094 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 492 543 IPR000408 -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 125 201 - -
Gabi1807g00004 1094 Coils Coil 796 837 - -
Gabi1807g00004 1094 MobiDBLite consensus disorder prediction 893 913 - -
Gabi1807g00004 1094 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi1807g00004 1094 FunFam PH, RCC1 and FYVE domains-containing protein 1 180 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1807g00004 Gabi-Chr1807 14377 23414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1807g00004 855 1085 Major Intrinsic Protein MIP AT1G31880 29.461 1.61e-16 80.9