Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1807g00003 ATGGCAGATCTTGCTAGCTACGGAAATGCCGACCGTGACCTCGAGCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAGTATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCTTTTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTGTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTTTCTGCGCCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGGTGGTCTCAAAGCACTGATATCTTCTGGGCAAGGTGATCGGGACTTGACATCAAATAGAACAAGTGAAAGTTCAACCAGTGCATCAAGAGACATCAGTTCTCCTGACGTTTCTCTGAGTCTTCCAAATACTTCACCAAAGTCCTTTCGCCCTGACAATACCTTAAATTCTGAAAGGTCACATGCACCATCAGTCCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTGTTCGTGTTAGTGTGTCAAGTGCCCCTAGCACATCTAGTCATGGATCTGCACCTGATGAGTATGATGCTCTGGGAGATGTATACTTATGGGGGGAGGTTATATGTGAAAACCTGAGAGTTGGTGCTGATAAAAATGTCAATTATTTCAGCCTGGGGGCAGATGTGCTTCTCCCCAGACCACTGGAATCAAATGTAGTTCTGGATGTACAACGTATAGCATGTGGTGTTAGACATTCTTCTCTTGTCACTAGGCAAGGTGAAGTTTTTACATGGGGGGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTGGAGGGACTTCAGGTTGCTTTTGTTGCTTGTGGTCCATGGCATACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGCGATGGAACATTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCCAGTGCTAGTGTATCATCAGGTAAATTATTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGACAAGGAGGCACGGCTTGAACCTACTTGTGTGCCTGCGCTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGTAGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAACTGCCATGCTTGGTTGGAGACAAGATTGCTGGGGATTTCGTAGAAGAAATTGCATGTGGTTCATATCATGTGGCTGTATTAACATCAAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATAGAAAAACACCAACTCTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCATGCTATTCTGCTGCCGTATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGACATTTGGCTTCACCAGAAAGAGGCATAATTGTTATAATTGTGGACTTGTTCACTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCCCTGGCTCCTGATCCGGGCAAGCCATATCGCGTGTGTGATTCTTGTCATGCAAAATTGAACAAAGTTGCAGAAACTAGCAATAATAATCGGAGGAATGCTTTGCCTCGTCTATCAGGTGAAAACAAGGACAGGTTAGACAGGTCTGAGCTGAAATTGTCCAAGTCTGTAATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCCAAACAAGGAAAGAAGGCCGATACGTTCTCACTGGTTCGCACCTTACAAGCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTGTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCGGCTACCCCGATTCCAACAACATCGGGACTTTCGTTCTCCAAAAATGTTGCTGATAGTTTGAATAAAACCAATGAACTTTTAAATCAAGAAGTGCAGAAGTTATGTGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATCAGAGCTTCAAAAGTCAGTAAGAAAGACTCAAGAAGCTATGGCCCTGGCTGCTGAGGAATCTTCTAAGTCTGAAGCTACAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGACTAAGAAGCTTCCTCCTGGAGTTTATGATGATGAGAACATTAGACCAGCTTCCCTATCAAATGGTCATGAGCCAAATGCCGTCCGATATTCAGATTCAAACAGCGAGCAGCACTCGAGGGCAGAGTTAATCAGTGGCTCTAGTATGGCCTCCATAGGACTTGAATCCTCACTGTTGGATAGAACTGTGGGGAATTCGCCAGGAACCAATGTAACTAATCTTCACCAGCAAATCCGGGGCCTTGCGACCTCTAATGGGACTAATAATCATCCAGATGTTAGATTGCCAAATGGTGATGGTGTGATTCAGGCAAGAAGCAGCAGTAGCACGTCAGATACAGTTGAGGGTAGGGATTCCGGGCATTTCCATGACGATGAGAGTGGTTTGAGATCGAGGAATCCTGCACCTTCTGCTTATAATATTCAAATTGAAGCGGAATGGATTGATCAGTATGAACCTGGTGTCTATATAACACTTGTGACCCTGCATGATGGAACAAGGGATCTGAAGCGAGTGCGCTTCAGCCGGAGGAGATTCGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGATAAGGTATATGAAAAATACAATGTTCGCAGCTCGGAAAAGTCTTCCGGCCAAGCAGCATGTAGGTCAGAGAGAGCTGGTTTGCCTGTTTCCCATAGCTAG 3315 0.4456 MADLASYGNADRDLEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESFLIWISSSGERSLKLSSVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIGGLKALISSGQGDRDLTSNRTSESSTSASRDISSPDVSLSLPNTSPKSFRPDNTLNSERSHAPSVPTNMQVKGSGSDAVRVSVSSAPSTSSHGSAPDEYDALGDVYLWGEVICENLRVGADKNVNYFSLGADVLLPRPLESNVVLDVQRIACGVRHSSLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIATQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGDFVEEIACGSYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSCYSAAVCLHKWVSGAEQSQCSACRQTFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCHAKLNKVAETSNNNRRNALPRLSGENKDRLDRSELKLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTLQAPSLLQLKDVVLSTAVDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKNVADSLNKTNELLNQEVQKLCAQVESLRQRCELQESELQKSVRKTQEAMALAAEESSKSEATKEVIKSLTAQLKDLTKKLPPGVYDDENIRPASLSNGHEPNAVRYSDSNSEQHSRAELISGSSMASIGLESSLLDRTVGNSPGTNVTNLHQQIRGLATSNGTNNHPDVRLPNGDGVIQARSSSSTSDTVEGRDSGHFHDDESGLRSRNPAPSAYNIQIEAEWIDQYEPGVYITLVTLHDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRSSEKSSGQAACRSERAGLPVSHS 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1807g00003 1104 Gene3D - 13 129 IPR011993 -
Gabi1807g00003 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 449 496 IPR000408 -
Gabi1807g00003 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 501 550 IPR000408 -
Gabi1807g00003 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 555 602 IPR000408 -
Gabi1807g00003 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 387 435 IPR000408 -
Gabi1807g00003 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 280 328 IPR000408 -
Gabi1807g00003 1104 Pfam Regulator of chromosome condensation (RCC1) repeat 332 383 IPR000408 -
Gabi1807g00003 1104 Pfam FYVE zinc finger 606 672 IPR000306 GO:0046872
Gabi1807g00003 1104 Gene3D - 438 603 IPR009091 -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 903 923 - -
Gabi1807g00003 1104 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 879 - -
Gabi1807g00003 1104 Pfam Transcription factor BRX N-terminal domain 857 889 IPR027988 -
Gabi1807g00003 1104 ProSiteProfiles BRX domain profile. 1024 1079 IPR013591 -
Gabi1807g00003 1104 FunFam PH, RCC1 and FYVE domains-containing protein 1 440 611 - -
Gabi1807g00003 1104 Coils Coil 806 847 - -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 980 994 - -
Gabi1807g00003 1104 SUPERFAMILY RCC1/BLIP-II 218 607 IPR009091 -
Gabi1807g00003 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 373 383 IPR000408 -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 280 331 IPR000408 -
Gabi1807g00003 1104 SMART fyve_4 602 673 IPR000306 GO:0046872
Gabi1807g00003 1104 Coils Coil 862 882 - -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 438 IPR000408 -
Gabi1807g00003 1104 FunFam PH, RCC1 and FYVE domains-containing protein 1 190 439 - -
Gabi1807g00003 1104 PRINTS Chromosome condensation regulator RCC1 signature 491 509 IPR000408 -
Gabi1807g00003 1104 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Gabi1807g00003 1104 PRINTS Chromosome condensation regulator RCC1 signature 549 570 IPR000408 -
Gabi1807g00003 1104 PRINTS Chromosome condensation regulator RCC1 signature 282 298 IPR000408 -
Gabi1807g00003 1104 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Gabi1807g00003 1104 PRINTS Chromosome condensation regulator RCC1 signature 389 403 IPR000408 -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 127 212 - -
Gabi1807g00003 1104 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 219 279 IPR000408 -
Gabi1807g00003 1104 Gene3D - 166 437 IPR009091 -
Gabi1807g00003 1104 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi1807g00003 1104 CDD PH_PLC_plant-like 12 124 - -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 961 1014 - -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 450 501 IPR000408 -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 127 211 - -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 386 IPR000408 -
Gabi1807g00003 1104 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 685 IPR013083 -
Gabi1807g00003 1104 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 610 672 IPR017455 -
Gabi1807g00003 1104 SUPERFAMILY FYVE/PHD zinc finger 606 680 IPR011011 -
Gabi1807g00003 1104 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 766 799 - -
Gabi1807g00003 1104 SUPERFAMILY PH domain-like 14 123 - -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 887 923 - -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 1081 1104 - -
Gabi1807g00003 1104 MobiDBLite consensus disorder prediction 995 1009 - -
Gabi1807g00003 1104 Pfam Transcription factor regulating root and shoot growth via Pin3 1023 1078 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1807g00003 Gabi-Chr1807 14377 23414 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1807g00003 865 1095 Major Intrinsic Protein MIP AT1G31880 29.461 1.45e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1807g00003 - - gmx:100805364 1802.72