Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1807g00002 ATGGCAGATCTTGCTAGCTACGGAAATGCCGACCGTGACCTCGAGCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAGTATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCTTTTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTGTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTTTCTGCGCCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGGTGGTCTCAAAGCACTGATATCTTCTGGGCAAGGTGATCGGTCCAAAATTGATGGATGGAATGATGGGGGCCTCAATCTTGATGATACCAGGGACTTGACATCAAATAGAACAAGTGAAAGTTCAACCAGTGCATCAAGAGACATCAGTTCTCCTGACGTTTCTCTGAGTCTTCCAAATACTTCACCAAAGTCCTTTCGCCCTGACAATACCTTAAATTCTGAAAGGTCACATGCACCATCAGTCCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTGTTCGTGTTAGTGTGTCAAGTGCCCCTAGCACATCTAGTCATGGATCTGCACCTGATGAGTATGATGCTCTGGGAGATGTATACTTATGGGGGGAGGTTATATGTGAAAACCTGAGAGTTGGTGCTGATAAAAATGTCAATTATTTCAGCCTGGGGGCAGATGTGCTTCTCCCCAGACCACTGGAATCAAATGTAGTTCTGGATGTACAACGTATAGCATGTGGTGTTAGACATTCTTCTCTTGTCACTAGGCAAGGTGAAGTTTTTACATGGGGGGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTGGAGGGACTTCAGGTTGCTTTTGTTGCTTGTGGTCCATGGCATACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGCGATGGAACATTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCCAGTGCTAGTGTATCATCAGGTAAATTATTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGACAAGGAGGCACGGCTTGAACCTACTTGTGTGCCTGCGCTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGTAGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAACTGCCATGCTTGGTTGGAGACAAGATTGCTGGGGATTTCGTAGAAGAAATTGCATGTGGTTCATATCATGTGGCTGTATTAACATCAAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATAGAAAAACACCAACTCTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCATGCTATTCTGCTGCCGTATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGACATTTGGCTTCACCAGAAAGAGGCATAATTGTTATAATTGTGGACTTGTTCACTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCCCTGGCTCCTGATCCGGGCAAGCCATATCGCGTGTGTGATTCTTGTCATGCAAAATTGAACAAAGTTGCAGAAACTAGCAATAATAATCGGAGGAATGCTTTGCCTCGTCTATCAGGTGAAAACAAGGACAGGTTAGACAGGTCTGAGCTGAAATTGTCCAAGTCTGTAATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCCAAACAAGGAAAGAAGGCCGATACGTTCTCACTGGTTCGCACCTTACAAGCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTGTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCGGCTACCCCGATTCCAACAACATCGGGACTTTCGTTCTCCAAAAATGTTGCTGATAGTTTGAATAAAACCAATGAACTTTTAAATCAAGAAGTGCAGAAGTTATGTGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATCAGAGCTTCAAAAGTCAGTAAGAAAGACTCAAGAAGCTATGGCCCTGGCTGCTGAGGAATCTTCTAAGTCTGAAGCTACAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGACTAAGAAGCTTCCTCCTGGAGTTTATGATGATGAGAACATTAGACCAGCTTCCCTATCAAATGGTCATGAGCCAAATGCCGTCCGATATTCAGATTCAAACAGCGAGCAGCACTCGAGGGCAGAGTTAATCAGTGGCTCTAGTATGGCCTCCATAGGACTTGAATCCTCACTGTTGGATAGAACTGTGGGGAATTCGCCAGGAACCAATGCAAGAAGCAGCAGTAGCACGTCAGATACAGTTGAGGGTAGGGATTCCGGGCATTTCCATGACGATGAGAGTGGTTTGAGATCGAGGAATCCTGCACCTTCTGCTTATAATATTCAAATTGAAGCGGAATGGATTGATCAGTATGAACCTGGTGTCTATATAACACTTGTGACCCTGCATGATGGAACAAGGGATCTGAAGCGAGTGCGCTTCAGCCGGAGGAGATTCGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGATAAGGTATATGAAAAATACAATGTTCGCAGCTCGGAAAAGTCTTCCGGCCAAGCAGCATGTAGGTCAGAGAGAGCTGGTTTGCCTGTTTCCCATAGCTAG 3267 0.4457 MADLASYGNADRDLEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESFLIWISSSGERSLKLSSVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIGGLKALISSGQGDRSKIDGWNDGGLNLDDTRDLTSNRTSESSTSASRDISSPDVSLSLPNTSPKSFRPDNTLNSERSHAPSVPTNMQVKGSGSDAVRVSVSSAPSTSSHGSAPDEYDALGDVYLWGEVICENLRVGADKNVNYFSLGADVLLPRPLESNVVLDVQRIACGVRHSSLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIATQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGDFVEEIACGSYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSCYSAAVCLHKWVSGAEQSQCSACRQTFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCHAKLNKVAETSNNNRRNALPRLSGENKDRLDRSELKLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTLQAPSLLQLKDVVLSTAVDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKNVADSLNKTNELLNQEVQKLCAQVESLRQRCELQESELQKSVRKTQEAMALAAEESSKSEATKEVIKSLTAQLKDLTKKLPPGVYDDENIRPASLSNGHEPNAVRYSDSNSEQHSRAELISGSSMASIGLESSLLDRTVGNSPGTNARSSSSTSDTVEGRDSGHFHDDESGLRSRNPAPSAYNIQIEAEWIDQYEPGVYITLVTLHDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRSSEKSSGQAACRSERAGLPVSHS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 144 228 - -
Gabi1807g00002 1088 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Gabi1807g00002 1088 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Gabi1807g00002 1088 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Gabi1807g00002 1088 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Gabi1807g00002 1088 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Gabi1807g00002 1088 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Gabi1807g00002 1088 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 920 943 - -
Gabi1807g00002 1088 Pfam Transcription factor regulating root and shoot growth via Pin3 1007 1062 IPR013591 -
Gabi1807g00002 1088 SUPERFAMILY FYVE/PHD zinc finger 623 697 IPR011011 -
Gabi1807g00002 1088 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Gabi1807g00002 1088 SMART fyve_4 619 690 IPR000306 GO:0046872
Gabi1807g00002 1088 SUPERFAMILY RCC1/BLIP-II 235 624 IPR009091 -
Gabi1807g00002 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Gabi1807g00002 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Gabi1807g00002 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Gabi1807g00002 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Gabi1807g00002 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Gabi1807g00002 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Gabi1807g00002 1088 Gene3D - 183 454 IPR009091 -
Gabi1807g00002 1088 SUPERFAMILY PH domain-like 14 123 - -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 783 816 - -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 899 943 - -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 956 998 - -
Gabi1807g00002 1088 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Gabi1807g00002 1088 Gene3D - 13 131 IPR011993 -
Gabi1807g00002 1088 Gene3D - 455 620 IPR009091 -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Gabi1807g00002 1088 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 134 229 - -
Gabi1807g00002 1088 Coils Coil 823 864 - -
Gabi1807g00002 1088 ProSiteProfiles BRX domain profile. 1008 1063 IPR013591 -
Gabi1807g00002 1088 CDD PH_PLC_plant-like 12 124 - -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Gabi1807g00002 1088 Pfam Transcription factor BRX N-terminal domain 874 906 IPR027988 -
Gabi1807g00002 1088 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi1807g00002 1088 Coils Coil 879 899 - -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Gabi1807g00002 1088 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 896 - -
Gabi1807g00002 1088 FunFam PH, RCC1 and FYVE domains-containing protein 1 457 628 - -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Gabi1807g00002 1088 FunFam PH, RCC1 and FYVE domains-containing protein 1 207 456 - -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 979 993 - -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 956 978 - -
Gabi1807g00002 1088 MobiDBLite consensus disorder prediction 1065 1088 - -
Gabi1807g00002 1088 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 621 702 IPR013083 -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 296 IPR000408 -
Gabi1807g00002 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1807g00002 Gabi-Chr1807 14377 23414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1807g00002 882 1079 Major Intrinsic Protein MIP AT1G31880 30.244 2.18e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1807g00002 - - gmx:100805364 1773.44