Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi1807g00001 | ATGGCAGATCTTGCTAGCTACGGAAATGCCGACCGTGACCTCGAGCAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAGTATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCTTTTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGTCTGAAGCTATCTTCTGTGTCGAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTTTCTGCGCCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGGTGGTCTCAAAGCACTGATATCTTCTGGGCAAGGTGATCGGTCCAAAATTGATGGATGGAATGATGGGGGCCTCAATCTTGATGATACCAGGGACTTGACATCAAATAGAACAAGTGAAAGTTCAACCAGTGCATCAAGAGACATCAGTTCTCCTGACGTTTCTCTGAGTCTTCCAAATACTTCACCAAAGTCCTTTCGCCCTGACAATACCTTAAATTCTGAAAGGTCACATGCACCATCAGTCCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTGTTCGTGTTAGTGTGTCAAGTGCCCCTAGCACATCTAGTCATGGATCTGCACCTGATGAGTATGATGCTCTGGGAGATGTATACTTATGGGGGGAGGTTATATGTGAAAACCTGAGAGTTGGTGCTGATAAAAATGTCAATTATTTCAGCCTGGGGGCAGATGTGCTTCTCCCCAGACCACTGGAATCAAATGTAGTTCTGGATGTACAACGTATAGCATGTGGTGTTAGACATTCTTCTCTTGTCACTAGGCAAGGTGAAGTTTTTACATGGGGGGAAGAATCGGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGCTTCTACAACTGTTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGCTGGGGAACTATATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCATTGGAGGGACTTCAGGTTGCTTTTGTTGCTTGTGGTCCATGGCATACAGCCTTGATAACTTCAACTGGGCAGCTCTTTACATTTGGCGATGGAACATTTGGTGTCTTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTGGAATCCTTATCAGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGCAACACAATCCAGTGCTAGTGTATCATCAGGTAAATTATTTACTTGGGGTGATGGAGACAAAAATCGCCTCGGACATGGGGACAAGGAGGCACGGCTTGAACCTACTTGTGTGCCTGCGCTTATCGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACGGTAGGCCTGACAACATCTGGACGTGTTTTTACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAACTGCCATGCTTGGTTGGAGACAAGATTGCTGGGGATTTCGTAGAAGAAATTGCATGTGGTTCATATCATGTGGCTGTATTAACATCAAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATAGAAAAACACCAACTCTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCATGCTATTCTGCTGCCGTATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGACATTTGGCTTCACCAGAAAGAGGCATAATTGTTATAATTGTGGACTTGTTCACTGCCATTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCCCTGGCTCCTGATCCGGGCAAGCCATATCGCGTGTGTGATTCTTGTCATGCAAAATTGAACAAAGTTGCAGAAACTAGCAATAATAATCGGAGGAATGCTTTGCCTCGTCTATCAGGTGAAAACAAGGACAGGTTAGACAGGTCTGAGCTGAAATTGTCCAAGTCTGTAATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCAGCCAAACAAGGAAAGAAGGCCGATACGTTCTCACTGGTTCGCACCTTACAAGCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTGTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCTCCTTTCTCTAGAAGACCAAGCCCCCCTCGTTCGGCTACCCCGATTCCAACAACATCGGGACTTTCGTTCTCCAAAAATGTTGCTGATAGTTTGAATAAAACCAATGAACTTTTAAATCAAGAAGTGCAGAAGTTATGTGCTCAGGTCGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATCAGAGCTTCAAAAGTCAGTAAGAAAGACTCAAGAAGCTATGGCCCTGGCTGCTGAGGAATCTTCTAAGTCTGAAGCTACAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGACTAAGAAGCTTCCTCCTGGAGTTTATGATGATGAGAACATTAGACCAGCTTCCCTATCAAATGGTCATGAGCCAAATGCCGTCCGATATTCAGATTCAAACAGCGAGCAGCACTCGAGGGCAGAGTTAATCAGTGGCTCTAGTATGGCCTCCATAGGACTTGAATCCTCACTGTTGGATAGAACTGTGGGGAATTCGCCAGGAACCAATGTAACTAATCTTCACCAGCAAATCCGGGGCCTTGCGACCTCTAATGGGACTAATAATCATCCAGATGTTAGATTGCCAAATGGTGATGGTGTGATTCAGGCAAGAAGCAGCAGTAGCACGTCAGATACAGTTGAGGGTAGGGATTCCGGGCATTTCCATGACGATGAGAGTGGTTTGAGATCGAGGAATCCTGCACCTTCTGCTTATAATATTCAAATTGAAGCGGAATGGATTGATCAGTATGAACCTGGTGTCTATATAACACTTGTGACCCTGCATGATGGAACAAGGGATCTGAAGCGAGTGCGCTTCAGCCGGAGGAGATTCGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGATAAGGTATATGAAAAATACAATGTTCGCAGCTCGGAAAAGTCTTCCGGCCAAGCAGCATGTAGGTCAGAGAGAGCTGGTTTGCCTGTTTCCCATAGCTAG | 3366 | 0.4456 | MADLASYGNADRDLEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESFLIWISSSGERSLKLSSVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIGGLKALISSGQGDRSKIDGWNDGGLNLDDTRDLTSNRTSESSTSASRDISSPDVSLSLPNTSPKSFRPDNTLNSERSHAPSVPTNMQVKGSGSDAVRVSVSSAPSTSSHGSAPDEYDALGDVYLWGEVICENLRVGADKNVNYFSLGADVLLPRPLESNVVLDVQRIACGVRHSSLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTTVDFVACGEFHSCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIATQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVGDKIAGDFVEEIACGSYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPTLVEALKDRHVKYIACGSCYSAAVCLHKWVSGAEQSQCSACRQTFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCHAKLNKVAETSNNNRRNALPRLSGENKDRLDRSELKLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTLQAPSLLQLKDVVLSTAVDLRRTVPRPVVAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKNVADSLNKTNELLNQEVQKLCAQVESLRQRCELQESELQKSVRKTQEAMALAAEESSKSEATKEVIKSLTAQLKDLTKKLPPGVYDDENIRPASLSNGHEPNAVRYSDSNSEQHSRAELISGSSMASIGLESSLLDRTVGNSPGTNVTNLHQQIRGLATSNGTNNHPDVRLPNGDGVIQARSSSSTSDTVEGRDSGHFHDDESGLRSRNPAPSAYNIQIEAEWIDQYEPGVYITLVTLHDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYEKYNVRSSEKSSGQAACRSERAGLPVSHS | 1121 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 144 | 228 | - | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 978 | 1031 | - | - | |
Gabi1807g00001 | 1121 | Gene3D | - | 13 | 131 | IPR011993 | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 1098 | 1121 | - | - | |
Gabi1807g00001 | 1121 | Pfam | FYVE zinc finger | 623 | 689 | IPR000306 | GO:0046872 | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 467 | 518 | IPR000408 | - | |
Gabi1807g00001 | 1121 | SUPERFAMILY | FYVE/PHD zinc finger | 623 | 697 | IPR011011 | - | |
Gabi1807g00001 | 1121 | Gene3D | - | 183 | 454 | IPR009091 | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 627 | 689 | IPR017455 | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 997 | 1011 | - | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 904 | 940 | - | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | BRX domain profile. | 1041 | 1096 | IPR013591 | - | |
Gabi1807g00001 | 1121 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 390 | 400 | IPR000408 | - | |
Gabi1807g00001 | 1121 | SMART | fyve_4 | 619 | 690 | IPR000306 | GO:0046872 | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 1012 | 1026 | - | - | |
Gabi1807g00001 | 1121 | SUPERFAMILY | RCC1/BLIP-II | 235 | 624 | IPR009091 | - | |
Gabi1807g00001 | 1121 | Gene3D | - | 455 | 620 | IPR009091 | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 783 | 816 | - | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 920 | 940 | - | - | |
Gabi1807g00001 | 1121 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 621 | 702 | IPR013083 | - | |
Gabi1807g00001 | 1121 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 442 | 452 | IPR000408 | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 519 | 570 | IPR000408 | - | |
Gabi1807g00001 | 1121 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 207 | 456 | - | - | |
Gabi1807g00001 | 1121 | MobiDBLite | consensus disorder prediction | 134 | 229 | - | - | |
Gabi1807g00001 | 1121 | Coils | Coil | 823 | 864 | - | - | |
Gabi1807g00001 | 1121 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 297 | 345 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 349 | 400 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 518 | 567 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 466 | 513 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 572 | 619 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 404 | 452 | IPR000408 | - | |
Gabi1807g00001 | 1121 | CDD | PH_PLC_plant-like | 12 | 124 | - | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 349 | 403 | IPR000408 | - | |
Gabi1807g00001 | 1121 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 896 | - | - | |
Gabi1807g00001 | 1121 | Coils | Coil | 879 | 899 | - | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 297 | 348 | IPR000408 | - | |
Gabi1807g00001 | 1121 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 457 | 628 | - | - | |
Gabi1807g00001 | 1121 | SUPERFAMILY | PH domain-like | 14 | 123 | - | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 571 | 622 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1040 | 1095 | IPR013591 | - | |
Gabi1807g00001 | 1121 | Pfam | Pleckstrin homology domain | 15 | 123 | IPR001849 | - | |
Gabi1807g00001 | 1121 | PRINTS | Chromosome condensation regulator RCC1 signature | 566 | 587 | IPR000408 | - | |
Gabi1807g00001 | 1121 | PRINTS | Chromosome condensation regulator RCC1 signature | 349 | 365 | IPR000408 | - | |
Gabi1807g00001 | 1121 | PRINTS | Chromosome condensation regulator RCC1 signature | 299 | 315 | IPR000408 | - | |
Gabi1807g00001 | 1121 | PRINTS | Chromosome condensation regulator RCC1 signature | 390 | 406 | IPR000408 | - | |
Gabi1807g00001 | 1121 | PRINTS | Chromosome condensation regulator RCC1 signature | 406 | 420 | IPR000408 | - | |
Gabi1807g00001 | 1121 | PRINTS | Chromosome condensation regulator RCC1 signature | 508 | 526 | IPR000408 | - | |
Gabi1807g00001 | 1121 | Pfam | Transcription factor BRX N-terminal domain | 874 | 906 | IPR027988 | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 236 | 296 | IPR000408 | - | |
Gabi1807g00001 | 1121 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 404 | 455 | IPR000408 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi1807g00001 | Gabi-Chr1807 | 14377 | 23414 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi1807g00001 | 882 | 1112 | Major Intrinsic Protein MIP | AT1G31880 | 29.461 | 1.69e-16 | 80.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi1807g00001 | - | - | gmx:100805364 | 1833.92 |