Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1806g00009 ATGGACTACTATTTTGGAAACCCTAATTACGGTCACTCTATGACTCCTTCCTCCTCTGAGTTCATGTTATCTGATTATCTCATGCTCGATGATGTCGTTGATCATCAAGAGTCTTGGTCACAAAGTACAGAAACAGAATCATCGGAGAAACCAGCCTCCAGCAATGCAAGTAATGGGCTTGGTGATGCAACCTCTACTAATAACAATAACATAAAATGCAAAAATGGGATAAAGCTAAACAGGGTAGAAGTGAGCTCAAGGATCACGTTTAGAACCAGATCGCAGCTTGAAATTATGGATGATGGATACAAATGGAGGAAGTACGGAAAGAAGTCAGTGAAGAATAGTCCGAACCCAAGGAACTACTATAAGTGTTCGTGTGAAGGGTGTAATGTGAAGAAAAGGGTGGAAAGGGATAGGGATGACTCGAGCTATGTGTTAACAACTTATGAAGGTGTCCACAATCATGAGAGTCCTTGTAATGTCTACTACAACCAAATGTCCTTGGTTCATTCTTATGATTGGGCGCGGCAAGATTCTGCAAACCTATCTGCTAATTCCTAG 564 0.4131 MDYYFGNPNYGHSMTPSSSEFMLSDYLMLDDVVDHQESWSQSTETESSEKPASSNASNGLGDATSTNNNNIKCKNGIKLNRVEVSSRITFRTRSQLEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSCEGCNVKKRVERDRDDSSYVLTTYEGVHNHESPCNVYYNQMSLVHSYDWARQDSANLSANS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1806g00009 187 SUPERFAMILY WRKY DNA-binding domain 91 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi1806g00009 187 Pfam WRKY DNA -binding domain 100 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1806g00009 187 ProSiteProfiles WRKY domain profile. 94 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1806g00009 187 MobiDBLite consensus disorder prediction 37 67 - -
Gabi1806g00009 187 FunFam WRKY transcription factor 57 85 159 - -
Gabi1806g00009 187 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 162 IPR044810 GO:0003700
Gabi1806g00009 187 SMART WRKY_cls 99 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi1806g00009 187 Gene3D WRKY domain 86 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1806g00009 Gabi-Chr1806 122459 125445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1806g00009 83 174 WRKY Transcription Factor Family AT5G64810 70.652 4.91e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi1806g00009 WRKY 4.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1806g00009 - - gmx:100127396 261.151