Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1806g00006 ATGGACTTGGCCGCGAAGCTTCATCACCTGGACCTCACCGGCGCTGTCATTTTGGATGCACGAAAACCCTCTATACGACCTCCACTTTCCACCAATCGATTCTTTGGCCCCAAAAGACCCAATTCTCGTTTATCCGCTGTGGCCGTCGACGACGACACGTCACTGACCGAAGACGACATCGAGTCTCTGTTTTCCGACTCTTCGGCCGATAAACGACAAGTAAACAAGCAAACGAATACAGGCGCTTCGAGCGTTTCATCAGGTGTGAAGTTAGAAAACGTGAGCAAAACCTATAAGGGTGTGACTGTGTTGAAAGATGTGAGTTGGGAAGTGAAGAAGGGAGAGAAAGTGGGTTTGGTTGGCGTAAACGGTGCGGGTAAAACGACCCAGATGAGGATTATTGCGGGTCTGGAAGACCCGGATTCGGGAAACGTGATAAAGGCCAAACCTAATATGAAGATTGCGTTTTTGAGCCAAGAGTTTGAGGTGTCACTGAGCAGGACGGTGAGGGAGGAGTTTATGAATGCGTTCAAAGAGGAAATGGAGATAGCTGGGAAATTGGAGAAGGTGCAGAAGGCGCTTGAGGGTGCTGTTAACAATTTGGAATTGATGGGAAGGCTTTTGGATGAGCTTGATTTGCTTCAGAGACGAGCTCAGTCTGTGGAATTGGATGAGGTTGATGCAAAGATAAGTAAATTGATGCCTGAACTTGGGTTTGCTTCTGAGGATTCTGATAGGCTGGTAGCATCATTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAAATTCTACTTCAGGAACCAGATTTATTACTGTTGGATGAGCCTACAAATCATCTTGATCTTGACACCATTGAATGGCTTGAAGACTATCTTAACAAGCAGGACGTGCCGATGGTTATCATTTCCCATGACAGGGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGAAATGGGTGTATCCAGGACATACGAGGGGAATTATTCTAAGTTTGTAATTTCAAAGGCAGAATGGATTGCAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACGAAAGACTTGATAAGTAGGTTAGGCGCTGGAGCAAATTCTGGCCGTGCTTCAACTGCGGAGAAGAAGCTGGAGAGGCTTCAGGAAGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGGAGGAGTGGAAGATTTGTTGTGACAATTAATAACTTGGAATTTGGCTTTGGGGATAAGATACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAGATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATCATGGGTTTAGAGAAGCCAATTAGGGGTGAAGTTGTGGTTGGGGAGCATAATGTATTACCGAACTATTTTGAGCAAAATCAGGCAGAAGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAAGAAGCTGCCGAGGACTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTCAAATCTGATATGCTTGACCGAAAAGTTTCCCTGTTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCAAAAGAAATGCTTGAGGAAGCAATCACTGAGTACGAGGGCACTGTTATCACAGTTTCTCATGATCGATACTTTATAAAGCAGATAGTTAATAGAGTGATAGAAGTTAAAGATGGCACTTTACAGGATTATGCGGGCGATTACAATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGAGAGCTTGAACGCGAGGCAGAGCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGAACTTTCAGGCAGCGAAACAGAAGTCTAAAGGTGTGAAAAATGCGAAGAGATGGAACTGA 2052 0.4405 MDLAAKLHHLDLTGAVILDARKPSIRPPLSTNRFFGPKRPNSRLSAVAVDDDTSLTEDDIESLFSDSSADKRQVNKQTNTGASSVSSGVKLENVSKTYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEDPDSGNVIKAKPNMKIAFLSQEFEVSLSRTVREEFMNAFKEEMEIAGKLEKVQKALEGAVNNLELMGRLLDELDLLQRRAQSVELDEVDAKISKLMPELGFASEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSKFVISKAEWIAAQYAAWEKQQKEIEQTKDLISRLGAGANSGRASTAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRFVVTINNLEFGFGDKILFNKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPIRGEVVVGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYEGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQNFQAAKQKSKGVKNAKRWN 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1806g00006 683 Coils Coil 643 672 - -
Gabi1806g00006 683 CDD ABCF_EF-3 89 319 - -
Gabi1806g00006 683 Gene3D - 85 370 IPR027417 -
Gabi1806g00006 683 SMART AAA_5 440 608 IPR003593 GO:0016887
Gabi1806g00006 683 SMART AAA_5 113 329 IPR003593 GO:0016887
Gabi1806g00006 683 Pfam ABC transporter 432 563 IPR003439 GO:0005524
Gabi1806g00006 683 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Gabi1806g00006 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 416 631 IPR003439 GO:0005524
Gabi1806g00006 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 621 IPR027417 -
Gabi1806g00006 683 Gene3D - 378 644 IPR027417 -
Gabi1806g00006 683 MobiDBLite consensus disorder prediction 633 663 - -
Gabi1806g00006 683 Pfam ABC transporter 318 405 IPR032781 -
Gabi1806g00006 683 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 88 674 - -
Gabi1806g00006 683 MobiDBLite consensus disorder prediction 633 683 - -
Gabi1806g00006 683 FunFam ABC transporter ATP-binding protein 376 643 - -
Gabi1806g00006 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 89 347 IPR003439 GO:0005524
Gabi1806g00006 683 FunFam Putative ABC transporter ATP-binding component 90 374 - -
Gabi1806g00006 683 Coils Coil 204 224 - -
Gabi1806g00006 683 CDD ABCF_EF-3 416 608 - -
Gabi1806g00006 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 323 IPR027417 -
Gabi1806g00006 683 ProSitePatterns ABC transporters family signature. 251 265 IPR017871 GO:0005524|GO:0016887
Gabi1806g00006 683 Pfam ABC transporter 104 279 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1806g00006 Gabi-Chr1806 87634 93702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1806g00006 75 305 Calmodulin-binding Proteins AT2G36910 25.306 6.59e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1806g00006 - - gmx:100796907 1105.51