Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1806g00005 ATGGACTTGGCCGCGAAGCTTCATCACCTGGACCTCACCGGCGCTGTCATTTTGGATGCACGAAAACCCTCTATACGACCTCCACGCACGCTGTCGTTTACTCAAACCGCCAGAGGGAACAACATCAACATCCACACTAACACTAATTTAGTTTCCACCAATCGATTCTTTGGCCCCAAAAGACCCAATTCTCGTTTATCCGCTGTGGCCGTCGACGACGACACGTCACTGACCGAAGACGACATCGAGTCTCTGTTTTCCGACTCTTCGGCCGATAAACGACAAGTAAACAAGCAAACGAATACAGGCGCTTCGAGCGTTTCATCAGGTGTGAAGTTAGAAAACGTGAGCAAAACCTATAAGGGTGTGACTGTGTTGAAAGATGTGAGTTGGGAAGTGAAGAAGGGAGAGAAAGTGGGTTTGGTTGGCGTAAACGGTGCGGGTAAAACGACCCAGATGAGGATTATTGCGGGTCTGGAAGACCCGGATTCGGGAAACGTGATAAAGGCCAAACCTAATATGAAGATTGCGTTTTTGAGCCAAGAGTTTGAGGTGTCACTGAGCAGGACGGTGAGGGAGGAGTTTATGAATGCGTTCAAAGAGGAAATGGAGATAGCTGGGAAATTGGAGAAGGTGCAGAAGGCGCTTGAGGGTGCTGTTAACAATTTGGAATTGATGGGAAGGCTTTTGGATGAGCTTGATTTGCTTCAGAGACGAGCTCAGTCTGTGGAATTGGATGAGGTTGATGCAAAGATAAGTAAATTGATGCCTGAACTTGGGTTTGCTTCTGAGGATTCTGATAGGCTGGTAGCATCATTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAAATTCTACTTCAGGAACCAGATTTATTACTGTTGGATGAGCCTACAAATCATCTTGATCTTGACACCATTGAATGGCTTGAAGACTATCTTAACAAGCAGGACGTGCCGATGGTTATCATTTCCCATGACAGGGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGAAATGGGTGTATCCAGGACATACGAGGGGAATTATTCTAAGTTTGTAATTTCAAAGGCAGAATGGATTGCAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACGAAAGACTTGATAAGTAGGTTAGGCGCTGGAGCAAATTCTGGCCGTGCTTCAACTGCGGAGAAGAAGCTGGAGAGGCTTCAGGAAGAGGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGAGCGTGGGAGGAGTGGAAGATTTGTTGTGACAATTAATAACTTGGAATTTGGCTTTGGGGATAAGATACTTTTCAACAAGGCAAATCTTACAATTGAAAGGGGAGAAAAGATTGCCATTATTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATCATGGGTTTAGAGAAGCCAATTAGGGGTGAAGTTGTGGTTGGGGAGCATAATGTATTACCGAACTATTTTGAGCAAAATCAGGCAGAAGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAAGAAGCTGCCGAGGACTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTCAAATCTGATATGCTTGACCGAAAAGTTTCCCTGTTGAGTGGTGGTGAGAAGGCACGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCAAAAGAAATGCTTGAGGAAGCAATCACTGAGTACGAGGGCACTGTTATCACAGTTTCTCATGATCGATACTTTATAAAGCAGATAGTTAATAGAGTGATAGAAGTTAAAGATGGCACTTTACAGGATTATGCGGGCGATTACAATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGAGAGCTTGAACGCGAGGCAGAGCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGAACTTTCAGGCAGCGAAACAGAAGTCTAAAGGTGTGAAAAATGCGAAGAGATGGAACTGA 2118 0.441 MDLAAKLHHLDLTGAVILDARKPSIRPPRTLSFTQTARGNNINIHTNTNLVSTNRFFGPKRPNSRLSAVAVDDDTSLTEDDIESLFSDSSADKRQVNKQTNTGASSVSSGVKLENVSKTYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEDPDSGNVIKAKPNMKIAFLSQEFEVSLSRTVREEFMNAFKEEMEIAGKLEKVQKALEGAVNNLELMGRLLDELDLLQRRAQSVELDEVDAKISKLMPELGFASEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSKFVISKAEWIAAQYAAWEKQQKEIEQTKDLISRLGAGANSGRASTAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRFVVTINNLEFGFGDKILFNKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPIRGEVVVGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITEYEGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNYYLEKNLDARERELEREAELEDKAPKVKAKSKMSKAEKEARKKQKMQNFQAAKQKSKGVKNAKRWN 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1806g00005 705 Pfam ABC transporter 340 427 IPR032781 -
Gabi1806g00005 705 MobiDBLite consensus disorder prediction 655 705 - -
Gabi1806g00005 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 438 653 IPR003439 GO:0005524
Gabi1806g00005 705 Pfam ABC transporter 126 301 IPR003439 GO:0005524
Gabi1806g00005 705 Coils Coil 226 246 - -
Gabi1806g00005 705 CDD ABCF_EF-3 438 630 - -
Gabi1806g00005 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 345 IPR027417 -
Gabi1806g00005 705 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 111 369 IPR003439 GO:0005524
Gabi1806g00005 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 643 IPR027417 -
Gabi1806g00005 705 FunFam ABC transporter ATP-binding protein 398 665 - -
Gabi1806g00005 705 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 110 696 - -
Gabi1806g00005 705 FunFam Putative ABC transporter ATP-binding component 112 396 - -
Gabi1806g00005 705 MobiDBLite consensus disorder prediction 90 109 - -
Gabi1806g00005 705 Gene3D - 400 666 IPR027417 -
Gabi1806g00005 705 Coils Coil 665 694 - -
Gabi1806g00005 705 CDD ABCF_EF-3 111 341 - -
Gabi1806g00005 705 ProSitePatterns ABC transporters family signature. 557 571 IPR017871 GO:0005524|GO:0016887
Gabi1806g00005 705 SMART AAA_5 462 630 IPR003593 GO:0016887
Gabi1806g00005 705 SMART AAA_5 135 351 IPR003593 GO:0016887
Gabi1806g00005 705 Gene3D - 107 392 IPR027417 -
Gabi1806g00005 705 Pfam ABC transporter 454 585 IPR003439 GO:0005524
Gabi1806g00005 705 MobiDBLite consensus disorder prediction 655 685 - -
Gabi1806g00005 705 ProSitePatterns ABC transporters family signature. 273 287 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1806g00005 Gabi-Chr1806 87634 93702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1806g00005 97 327 Calmodulin-binding Proteins AT2G36910 25.306 7.47e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1806g00005 - - gmx:100796907 1122.84