Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1806g00002 ATGGAAGGTGAAGAGGGAAAACAATCTTCCCACGAAAATCCATACACTGAATTTGAGGAAGTTAACTTTGATTATTTTCTAGCAATTAGCTTGCAAGAACAAGAGAGAACGTTCACAACGCTAGCAACGATTCAAAGTGATGAAGATGCAAGTGACTCCTCTTTTAATAATGATGATGGTGATGCTGATTTTTTAGAGAGCCAAGAGTTTGAAACCAACAATCCGTTTCTTGAAGGTGAAGGAAGCAATTATGATGAAGAAATGGAAATGGAAGAAGATGACATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTGGGAGAGTTTATAGGAGAAGAGAAGAGAGGAATATCAGCAAATGAAATCTCTTCATGCTTAAGCCCTTACACTTACCAATCTGCTGAAAGCAAAAGTGGAATCGACCGTTGTGTGATTTGTCAGGTTGAATATAAAGAAGGTGAAGCCCTGATGGCACTTCAATGTGAACACCCTTATCATACAGATTGCATAACCGAGTGGCTTCAAATTAAGAAGGTTTGTCCAATATGTAACAATGAAGTTTCAGCTCCCAACATGGCTAAGAACCCTTGA 597 0.3819 MEGEEGKQSSHENPYTEFEEVNFDYFLAISLQEQERTFTTLATIQSDEDASDSSFNNDDGDADFLESQEFETNNPFLEGEGSNYDEEMEMEEDDIDPDELSYEELIELGEFIGEEKRGISANEISSCLSPYTYQSAESKSGIDRCVICQVEYKEGEALMALQCEHPYHTDCITEWLQIKKVCPICNNEVSAPNMAKNP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1806g00002 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 194 IPR013083 -
Gabi1806g00002 198 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 190 IPR033276 GO:0004842|GO:0016567|GO:0046621
Gabi1806g00002 198 SMART ring_2 145 185 IPR001841 -
Gabi1806g00002 198 FunFam E3 ubiquitin ligase BIG BROTHER-related 111 192 - -
Gabi1806g00002 198 MobiDBLite consensus disorder prediction 44 63 - -
Gabi1806g00002 198 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Gabi1806g00002 198 SUPERFAMILY RING/U-box 144 191 - -
Gabi1806g00002 198 Pfam Ring finger domain 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1806g00002 Gabi-Chr1806 32504 33100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1806g00002 92 189 C3H Transcription Factor Family AT3G63530 53.000 3.09e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1806g00002 K19045 - gmx:100526881 286.189