Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1806g00001 ATGGCATCAGAGCTTCAATTGCCACCGGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTTTTGCACTATCTCTGCCGCAAATGTACCTCTCAACCCATAGCCGTTCCCATCATCACCGAAATCGATCTCTACAAGTACGATCCTTGGGATCTTCCTGGTATGGCTTCGTATGGAGAGAAGGAGTGGTATTTTTTCTCACCACGGGACCGGAAATATCCGAACGGGTCGAGGCCGAACCGGGCAGCTGGGAGCGGGTACTGGAAGGCAACCGGGGCGGATAAACCCATTGGTAACCCGAAACCAGTTGGGATAAAAAAAGCATTAGTTTTTTACGCAGGGAAAGCACCAAAAGGGGATAAAACTAATTGGATCATGCATGAGTATCGTCTCGCTGACGTGGATCGCTCCGTTCGCAAAAAGAACAGTTTAAGGCTGGATGACTGGGTGCTTTGTCGAATTTACAATAAGAAGGGGACAATCGAGAAACAACCAAGCAGCGTTGTTGTTAGCCGGAAAACCGAATCGTTCGAAATGGAGGAAGACAAGAAGCCGGTGATTGTGCCACATGTGGGTGGTCTTCCGCCACCGCCTGCGACGGCGCCGGCTCCGATGACCGATTATATGTACTTTGACGCGTCGGATTCAATCCCGAAGCTGCACACGGACTCGAGCTGCTCAGAGCAGGTGGTGTCGCCGGAGTTTGCCAGCGAGGTGCAGAGCGAGCCGAAGTGGAACGAGTGGGAGAAGAACCTTGAATTTCCCTATAATTACGTGGATACCACTTTCGGGTCCCAATTCCAGAGCAGTAATCAGATGTCGCTGTTGCAGGACATGTTCATGTACCCACCCAAGCCCTTCTGA 864 0.515 MASELQLPPGFRFHPTDEELVLHYLCRKCTSQPIAVPIITEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGNPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGTIEKQPSSVVVSRKTESFEMEEDKKPVIVPHVGGLPPPPATAPAPMTDYMYFDASDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDTTFGSQFQSSNQMSLLQDMFMYPPKPF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1806g00001 287 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Gabi1806g00001 287 FunFam NAC transcription factor 16 161 - -
Gabi1806g00001 287 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Gabi1806g00001 287 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Gabi1806g00001 287 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Gabi1806g00001 287 PANTHER NAC TRANSCRIPTION FACTOR 56 7 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1806g00001 Gabi-Chr1806 9548 11437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1806g00001 1 287 NAC Transcription Factor Family AT1G01720 71.429 3.14e-146 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1806g00001 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1806g00001 - - gmx:100805768 486.493