Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1805g00013 ATGGCACTCGGCACTTACTTCAACTGGGACACTCTTCAAACTCCAAACTCAGAAATCAACACCTTCCATGAACCAACACCAGAACTAGCACTAGATAACTACTACAATAACCATAACCACAACATCTTTAACTACTCAGATGAAAGCCTCTTCCTTTCAAATACCCTTTTTGATCCTTATTTTGATCCAACCCTTTTTTCTATACCAGAGTTTTACCCTCCTCAACAACTCCTTTCTTGTCCTTCTTCTTATGACCCTTTCATTTCACTCACTGAAGATTACAACTTTCCATGTCCAAAACGCCAAAAGTGCTTGCATGAGGAACAAGAGCTTGTTGACCCTTCATCGCAAGAGCTTATTATACCATCCAATTTCTTTGTGCCTAATTATCCTTGTTCCTTGCAAGAAGAGGAACTGCAAGAACTCTTCTATGCAGTGCCAGAGTTTAAGGTTCCAGAACTTCCACAAGGTACTACTTGTGTGGGAAGTGCTGATTTTCAGTGTGAGAAGAAAACTAATGAGAGAACCATCTCTGCACAGAGCATAGCTGCAAGAGAAAGGAGGAGAAAGATCACTGAGAAAACCCAAGAGCTTGGAAAATTGGTTCCTGGTGGACCTAAGATGAACACTGCTGAGATGTTGCATGCAGCTGCAAAGTATGTCAAGTACCTTCAAGCACAAGTTGGAATGCTTGAACTTATGAAGACACTCAATGTAACTGAAGATAAGAAGGGTCCTCCAAGTGAAGAGCTACACACAATGGTTGTTTCTCCATTTGTTCAAGAGAAGCTGTATTCAGAGGAAATGTGCTTTGTTCCCAAAGAGTTAGTGACCACATTGACAAATCATAATGATGTTCAATCAAGACCTTCCATCCTTAAAGATCTTAAACAGTTGATTGAGACAGACATTGAGAAGAAACCAAAGCAAGAATAA 936 0.4028 MALGTYFNWDTLQTPNSEINTFHEPTPELALDNYYNNHNHNIFNYSDESLFLSNTLFDPYFDPTLFSIPEFYPPQQLLSCPSSYDPFISLTEDYNFPCPKRQKCLHEEQELVDPSSQELIIPSNFFVPNYPCSLQEEELQELFYAVPEFKVPELPQGTTCVGSADFQCEKKTNERTISAQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVGMLELMKTLNVTEDKKGPPSEELHTMVVSPFVQEKLYSEEMCFVPKELVTTLTNHNDVQSRPSILKDLKQLIETDIEKKPKQE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1805g00013 311 SMART finulus 181 230 IPR011598 GO:0046983
Gabi1805g00013 311 Gene3D - 171 243 IPR036638 GO:0046983
Gabi1805g00013 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Gabi1805g00013 311 Pfam Helix-loop-helix DNA-binding domain 181 225 IPR011598 GO:0046983
Gabi1805g00013 311 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 178 278 IPR045843 GO:0003700|GO:0006355
Gabi1805g00013 311 CDD bHLH_AtbHLH_like 180 232 IPR045239 -
Gabi1805g00013 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1805g00013 Gabi-Chr1805 213738 215408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1805g00013 84 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 39.827 6.69e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1805g00013 HLH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1805g00013 - - gmx:102665938 328.176