LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1805g00008	ATGATGCTCCATGAAGGTGAAATTAAAGTAGCCAGCATAGTAATTTTCTCATTGTTGTGTCTGCAGTGGATTACCACATATGCTGCAGTGAGTGGCATTTTAAAGCCAGGGGAGATTCTTGATCACTCAAGGAAACTATGTTCAGAAAAGCAAAATTTCTGTCTGAAATTTGAAGCTTTTGAGTCTGACCCAGGAAACACATACTTAGTCATTCAAAACACACACAGTCCTACCAGATATGCAGATTGGATAGCCAATAGAAATGACCCTATTGACAATGATTCAGGGGTTCTAACATTGAACCACTCAGGTTCTTTGATAATCACTAGTCAAGAAGGGAAGAAGCCAATAACAGTGTATTCTCCTGTTTCAGCTACCAACAAAACTGTTGCTGTCACCCTTTTGGATTCTGGAAACTTGATCCTACAAGAATATCATGACAATGGATCTATGAAGCAAGTGATGTGGCAAAGCTTTGATCATCCTTCAGAAATGCTGCTACCTGGTATGAAACTAGGGGTTAACCACAAGACTGGTAAGTCATGGTCTGTAATAGCATCAGTTTCTACAGGCCACCCAGCTCCAGGTTCTTTTACACTTGAATGGGAGCCAAAGAAACACCAATTGATAATAAGGAGGCAAGGAAAGATATATTGGACAAGTGGGACACTGAGAAACAATAGATTTTTTGAGAACATTCCAAAGGAAGTACAGCTCAAGTACCAATACAACATTGTCTCAAATAAGGATGAGGAGTCCTTCAGTTACAATAGCCAAAATGATGAATCACAGTGGGTGCTTTATAGTGATGGAAACTTAATTGATCCAAGAGTTGGAGTTATTGCTAGAGCTCAAACTTGTTATCGCTCCTTCAACAACAAAGGAGGTTGTCAAATATTGTCCCAACCCAAGTGTAGGCATCCTGGTGATAAATTTCAAGCTAGTTTTGGATATTTTGATCATCAATCATCCCCAGATGGTTTTTTCTTGGAAGACAAGAATATTACACTGACTGAAAGTGATTGTATGGATATTTGCTGGAACAATTGCAGCTGTGTTGGGTTCAATACTTATTTTCCCAATACAACTGGCTGTAGATATTATTATGGTGATTGGGTGCCTACTATAGTGAAATCTTCTGGATTAAGTGTCAATATTCTTGTAAAGGCACACAAAGATATGAAGAAGTGGATAAAAATTGGTCTTCTTATAGGAACAGCTGTACTCATAATTAGCCTTGGCATTTTCTTCCTATGCCTGAAAAGAAGAAAATCTGCACTTCAAGAGGGGAAGAGAAGAAAAATGAAGAATGACATGCTCAATGTCGTGGTGTCTGATAGATCTAACAGTATTATTGATGTTCAAAATGAAGCAATGAAAGGGAATGATTTAAGAAGCTTCAGTTATGCATCAATCATGGCAGCTACAAACAGGTTCAAACCAGAAAACAAGTTAGGAGAAGGAGGTTTTGGACCTGTATATAAGGGATTGTTACCTCAGGGAGAAGAAATAGCAATAAAAAAACTTTCAAAAGGTTCAGGGCAAGGAGTCATTGAGTTTAAAAATGAGTTAGTTCTCATATCTGAACTCCAACACATGAATATTGTCCAATTGTTGGGTTGCTGCATTCATGAAGACCAGAGAATGCTAATCTATGAGTATATGCCTAACAAAAGCTTGGACTTCTTTTTATTTGATTCTACTCAAAGCAAAAAGCTAGACTGGAAAAAACGTTTCAACATAATTGATGGAATTGCTCAAGGATTGCTCTATCTCCATAAGTATTCAAGATTAAGAGTAGTACATAGAGATCTGAAAGCTAGTAACATTCTTCTTGATGCAAATATGAATCCCAAAATTTCAGATTTTGGTATGGCCAGAATTTTCACACAAGGAGAATCAGATTTAAACACTAAAAGAATTGTTGGGACATATGGTTACATGTCACCTGAGTATGCCATGGAGGGAATTTTCTCTATCAAGTCAGATGTGTATGCTTTTGGAGTCTTACTCCTTGAAATTATTAGTGGTAGAAGAAATAACAGCTTCTACAATGCTGAAGGGCCACTCAATCTAGTAGGACATGCTTGGGAACTATGGAGACAAGGCCAAGGACTAGAACTAGTAGACTCAAATTTATCAGAATCATTGATTCAAGATGAAGCATTAAGATGCATTCATGTTGGTCTTTTATGTGTAGAAGAAAGTGCAGCTGATCGACCAACCATGTCAGAGATAATACCCATGTTGACTAGTGAAAGTACATCACTTCCTTTGCCTAGAAGACCAGCATTTTACCGTGGAAGAAAGATCAAGGAGGAATACAATTCTCCTAATGATAATGAAACTTATTCTGTGAATGACAGTTTAAAGCCAGGGGAGATTCTTGATCACTCAAGTAGACTATGTTCATCAAAGCAAAAATTCTGTCTGAAATTTGAAGCTCTTGAGGGCTCTAACATCCACTCAAGTGCTTTGATAATCACTAGTCAATATAGGAAGAAGCCCATAACAGTCTATTCTCCTGCTCTTGCTACCAGCAAAACGGTTGCTGTCACCCTTTTGGATTCTGGAAATTTGATCCTACAAGAATATGATGTCAATGGATATATTAAGCAATTGATGTGGCAAAGCTTTGATCATCCTTCAGATGTGCTGCTACCAGCATCAGTTTCTGTAGGCCACCCACCTTCAGGTTCCTTTGCACTTGAATGGGAGCCAAAGAAACATCAATTGATCATAAGAAGGCAAGGAAAGATATATTGGACAAGTGGGACACTGAGAAACAAAAGATTTTTTGAGAACATTCCAAAGAAAGTACAGATCAAGTACCAATACAACATTGTCTCAAATAAGGATGAGGAGTCCTTCAGTTACATAAGTCAAAATGATGAATCACAGTGGGTGCTATTTGATGATGATGGAAACTTGAGGGATACAAGAGGTGAAGTTATTGCTAGAGCTCACACTAGTTATCACTCCTTCAACAACAAAGGAGGTTGTCAAATATTGTCCCAACCCAAGTGTAGGCATCCTGGTGATAAATTTCAAGCTAGTTTTGGATATTTTGATCACCAATCCTCCCCTGATGGTTTTTTCACGGAAGACAAGAATATTACACTGACTGAAAGTGATTGTATGGCTATTTGCTGGAACAATTGCAGCTGTGTTGGATTCAATACTTAA	3186	0.3798	MMLHEGEIKVASIVIFSLLCLQWITTYAAVSGILKPGEILDHSRKLCSEKQNFCLKFEAFESDPGNTYLVIQNTHSPTRYADWIANRNDPIDNDSGVLTLNHSGSLIITSQEGKKPITVYSPVSATNKTVAVTLLDSGNLILQEYHDNGSMKQVMWQSFDHPSEMLLPGMKLGVNHKTGKSWSVIASVSTGHPAPGSFTLEWEPKKHQLIIRRQGKIYWTSGTLRNNRFFENIPKEVQLKYQYNIVSNKDEESFSYNSQNDESQWVLYSDGNLIDPRVGVIARAQTCYRSFNNKGGCQILSQPKCRHPGDKFQASFGYFDHQSSPDGFFLEDKNITLTESDCMDICWNNCSCVGFNTYFPNTTGCRYYYGDWVPTIVKSSGLSVNILVKAHKDMKKWIKIGLLIGTAVLIISLGIFFLCLKRRKSALQEGKRRKMKNDMLNVVVSDRSNSIIDVQNEAMKGNDLRSFSYASIMAATNRFKPENKLGEGGFGPVYKGLLPQGEEIAIKKLSKGSGQGVIEFKNELVLISELQHMNIVQLLGCCIHEDQRMLIYEYMPNKSLDFFLFDSTQSKKLDWKKRFNIIDGIAQGLLYLHKYSRLRVVHRDLKASNILLDANMNPKISDFGMARIFTQGESDLNTKRIVGTYGYMSPEYAMEGIFSIKSDVYAFGVLLLEIISGRRNNSFYNAEGPLNLVGHAWELWRQGQGLELVDSNLSESLIQDEALRCIHVGLLCVEESAADRPTMSEIIPMLTSESTSLPLPRRPAFYRGRKIKEEYNSPNDNETYSVNDSLKPGEILDHSSRLCSSKQKFCLKFEALEGSNIHSSALIITSQYRKKPITVYSPALATSKTVAVTLLDSGNLILQEYDVNGYIKQLMWQSFDHPSDVLLPASVSVGHPPSGSFALEWEPKKHQLIIRRQGKIYWTSGTLRNKRFFENIPKKVQIKYQYNIVSNKDEESFSYISQNDESQWVLFDDDGNLRDTRGEVIARAHTSYHSFNNKGGCQILSQPKCRHPGDKFQASFGYFDHQSSPDGFFTEDKNITLTESDCMAICWNNCSCVGFNT	1061

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1805g00008	1061	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	555	758	-	-
	Gabi1805g00008	1061	SMART	serkin_6	479	750	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1805g00008	1061	CDD	STKc_IRAK	485	751	-	-
	Gabi1805g00008	1061	Pfam	D-mannose binding lectin	825	889	IPR001480	-
	Gabi1805g00008	1061	Pfam	D-mannose binding lectin	83	185	IPR001480	-
	Gabi1805g00008	1061	FunFam	Uncharacterized protein	454	554	-	-
	Gabi1805g00008	1061	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	600	612	IPR008271	GO:0004672\|GO:0006468
	Gabi1805g00008	1061	Pfam	Protein tyrosine and serine/threonine kinase	482	749	IPR001245	GO:0004672\|GO:0006468
	Gabi1805g00008	1061	Gene3D	Phosphorylase Kinase; domain 1	440	554	-	-
	Gabi1805g00008	1061	SUPERFAMILY	Protein kinase-like (PK-like)	464	767	IPR011009	-
	Gabi1805g00008	1061	Gene3D	-	782	929	IPR036426	-
	Gabi1805g00008	1061	Gene3D	-	27	159	IPR036426	-
	Gabi1805g00008	1061	SUPERFAMILY	alpha-D-mannose-specific plant lectins	843	927	IPR036426	-
	Gabi1805g00008	1061	ProSiteProfiles	Bulb-type lectin domain profile.	31	155	IPR001480	-
	Gabi1805g00008	1061	SUPERFAMILY	alpha-D-mannose-specific plant lectins	80	184	IPR036426	-
	Gabi1805g00008	1061	SMART	blect_4	37	162	IPR001480	-
	Gabi1805g00008	1061	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	146	777	-	-
	Gabi1805g00008	1061	ProSiteProfiles	Protein kinase domain profile.	479	750	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1805g00008	1061	Gene3D	Transferase(Phosphotransferase) domain 1	555	757	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1805g00008	Gabi-Chr1805	145506	152325	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1805g00008	467	801	Receptor kinase-like Gene Family	AT4G11530	56.677	5.32e-127	400

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gabi1805g00008		PK_Tyr_Ser-Thr	5.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1805g00008	-		-	qsa:O6P43_029367	886.33