Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1804g00001 ATGGATCACTCCCAAATAATAACTATTGAAGACATTGACGTGAGTGGGAGTTTAGCACGTTATGATGATGTTGTTGATTTGGAGAAAGACACTGATGAGTTTGTTGATGATGATGAGTGTGAAATTATGGAAGATGAAGATGGTGATCATGTGCAAAATGTTGTACTTGAAATTGTGGGAGATGATATCAATGAATTTAGTGAGACTAGTTTTTTATGTAGGGTCTTTGGGACATCAGAAGAAGCTTATGTTTTTTATAATGATCATGCAAAAGGTAAGGGGTTTGGAATACGTAAGCAATTTTTTAACAAGAGTGCAAGAACACAGCAAATATATAGGTGGAGGTATGTGTGTTCGAAAGAAGGCATCAAGAAAGTGAATGATAAAGTAGTTAAAAGGCGAAGGGATACAAGGACTAATTGTTTGGCGATGTTACAAATAAAGTTGGTGGATGGAGTATGGAAAGTGGAGAAGTTCAATGATACACACAATCATTCATTGATTAACACTCCATCAAAGGTGAAGAAGTTTTCTTCTCAGAATGAATTACGACGCTCAAAGTTTACTAAATCTCTTGTTTCTATGCTTTCTGAGGAGGGTTTAACTTCTTCAAAAATCTCAAAGGTGGTGAATGCTATGGACAAAGAAGTTAATATTACTCCAGTGCAAATCTCCACTATTATATCAAGCCAACGAAAGAATAATGTGGGGCGAGAATGTCAAGGCATCATTAAACACTTTCAAAGGAAGTCTGTTCTTGATGGATCTTTTTATTTTGATATGCATTTAGCCGAAGATGGAACATTAAGAAGCGTATTCTGGGCGGATGGTAGGTCAAGAGCAGCATATGTTCAATTTGGTGATGTTCTTGTGTTTGATGTGACTTACCAAACAAATAAGTTCAAGTTTCCCTTTGCCCCTTTCGTTGGGGTTAATCACCATGGGCAATCAATTTTATTTGCAGCCGCTTTGTTAGAAGATGAAACAGAGGCAACATTTACATGGTTGTTTGAACAATTTCTGGAATGTATGTTTGATAAGTCTCCTATTGCTATTATCACTGATCAAGACAAAGCTATTGGAAAAGCAATTGCCAAAATATTTCCAAAAGCACGACATCGTTTTTGTGCGTGGCACATGAAAAAACATGTTATGGAACACACTCAAGCACTACGCTCACAATTTAAGGAGAGTTTTGATGTTGACTTTCGTGCATGGTATAAAAGTCGAAGCATTGATGAGTTTGAAGGCAGCTGGGAATCATTGAAGACTAAATATGATATTAAAGAAGGAACTTGGTTGGCTAACATGTATGTTTCACGTCATCATTGGGCAAAGGTATATTTGAAAGATACTTTTTGGGCTGGAATGACCACAAGTGGCCGAAGTGAGAGCATCAATGCTTTTTTTGATGGATACGTCAACTCCAACACAATGTTAAATGACTTTGTTACTCAATATGACAAAGCAATTAAGAGTAGGAGGGATGCTGAAGAAGATGAAGATTTTAAAACTAGAAATACAAAAGCAATTTTGGAGACTACTCATCAAATTGAAGCAATAGCTGGTGAGCGTTACACAAGAAAAATATTTAATATATTTAAAAAGGAGTGGATGGAAGCTGTTCTTCATTATGAGCATGAAAAGATTTTAATGAATGAAGATCTAATCAGGTACAAGGTGGGGTCTCACGAAGTTGATAAAGAGTGGTGGGCAATTGTTGACTATCATTTGACAGAAACCTTCACAGCTGATTGTTCTTGTGGAAAATTTCAGACTATGGGAATTTTGTGCAAACATATTCTATATATTATGAGGAGGAAAAAATTAAAAACCCTTCCTGAAAAATATATTTTGTCTAGATGGACCATGAATGCAAGCTATAAGGTTGAAAATCTTGTAGGTGATCATGCTGATACACCCACTAAGGAAGTTAGTGCATTGTTCTTGTGGTCGCTTCACTCCAAGTGCAATATGGCTATTTCCGAAGCAAGAGATTGTATGTCTGAAATTAGAAAGTTTGATGATTTTCTTGCTGACTTTATTAGACAGCAACTGGAAAGAAAGAGAAATATAATTGAAGATGAAGCAATTCCCCAAGTTGTTCCTTCACTAACTCCCGAAATTCTTTCACAAGTTTCACTCATTAACTATGTGCGTGATCCCATGCATCCAGTCAAAACTAAAGGGCGTCCAAAGGTTGCTTCACGATTGAAATCAAGCATTGAGTTGATTTCAAAACAACATAAGACTTGTAGTTATTGTGGAGGAAAGGGTCACAATAAAACCAGTTGTGAGAAGCGCAAGATGGATATTGCAAGAGAGAAGCAAAAGGAGTACAAAGATAACTATTTGTCAGAAAATCATTCAGAGTATCAATTTGAATATGTGGAAGTCCTATCTGATTTTGATGAAGATGTTGGCATTAAAGTTGCTTATGTTGGCAAAGTGAAAGGGTTTGTTAGTCTCTTTCTGCAAAATGTGCAGAATGGAGTTCGCTTATTTTGTGTTCCACCTAATGAGTTATATAGGTTCTCGCATCGGATTCCTTCATATAAGATGGCTGGTGATGAAAGGGAAGAAAAACCAACTATGAGAATGGAAAAGTGA 2610 0.364 MDHSQIITIEDIDVSGSLARYDDVVDLEKDTDEFVDDDECEIMEDEDGDHVQNVVLEIVGDDINEFSETSFLCRVFGTSEEAYVFYNDHAKGKGFGIRKQFFNKSARTQQIYRWRYVCSKEGIKKVNDKVVKRRRDTRTNCLAMLQIKLVDGVWKVEKFNDTHNHSLINTPSKVKKFSSQNELRRSKFTKSLVSMLSEEGLTSSKISKVVNAMDKEVNITPVQISTIISSQRKNNVGRECQGIIKHFQRKSVLDGSFYFDMHLAEDGTLRSVFWADGRSRAAYVQFGDVLVFDVTYQTNKFKFPFAPFVGVNHHGQSILFAAALLEDETEATFTWLFEQFLECMFDKSPIAIITDQDKAIGKAIAKIFPKARHRFCAWHMKKHVMEHTQALRSQFKESFDVDFRAWYKSRSIDEFEGSWESLKTKYDIKEGTWLANMYVSRHHWAKVYLKDTFWAGMTTSGRSESINAFFDGYVNSNTMLNDFVTQYDKAIKSRRDAEEDEDFKTRNTKAILETTHQIEAIAGERYTRKIFNIFKKEWMEAVLHYEHEKILMNEDLIRYKVGSHEVDKEWWAIVDYHLTETFTADCSCGKFQTMGILCKHILYIMRRKKLKTLPEKYILSRWTMNASYKVENLVGDHADTPTKEVSALFLWSLHSKCNMAISEARDCMSEIRKFDDFLADFIRQQLERKRNIIEDEAIPQVVPSLTPEILSQVSLINYVRDPMHPVKTKGRPKVASRLKSSIELISKQHKTCSYCGGKGHNKTSCEKRKMDIAREKQKEYKDNYLSENHSEYQFEYVEVLSDFDEDVGIKVAYVGKVKGFVSLFLQNVQNGVRLFCVPPNELYRFSHRIPSYKMAGDEREEKPTMRMEK 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1804g00001 869 Pfam Domain of unknown function (DUF3444) 786 858 IPR024593 -
Gabi1804g00001 869 Pfam SWIM zinc finger 582 602 IPR007527 GO:0008270
Gabi1804g00001 869 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 651 IPR031052 GO:0006355
Gabi1804g00001 869 SMART 26again6 584 611 IPR006564 GO:0008270
Gabi1804g00001 869 ProSiteProfiles Zinc finger SWIM-type profile. 576 609 IPR007527 GO:0008270
Gabi1804g00001 869 Pfam FAR1 DNA-binding domain 85 168 IPR004330 -
Gabi1804g00001 869 Pfam MULE transposase domain 289 382 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1804g00001 Gabi-Chr1804 5214 9104 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi1804g00001 MULE 1e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1804g00001 - - lsv:128127215 718.768