Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1801g00001 ATGGCTGCTCACTCTACGCCGTGGGTTTCCACCATGTTCGTCCTGCTTCTCCTTCTAGTGGCTACCGAGATGGGGCCCACAATGGTGGCAGAAGCAAGGAATTGTGAGTCTCAGAGCCATCGCTTCAAGGGAACATGTGTGAGTGACACTAACTGTGCTTCTGTTTGCCAAACTGAACACTTCACTGGAGGACATTGTCGTGGCTTCCGTCGCAGATGCTTTTGCACCAAAAAATGTTCATAA 243 0.5021 MAAHSTPWVSTMFVLLLLLVATEMGPTMVAEARNCESQSHRFKGTCVSDTNCASVCQTEHFTGGHCRGFRRRCFCTKKCS 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1801g00001 80 PANTHER DEFENSIN-LIKE PROTEIN 1 12 79 - -
Gabi1801g00001 80 Pfam Gamma-thionin family 33 79 - -
Gabi1801g00001 80 SUPERFAMILY Scorpion toxin-like 33 79 IPR036574 -
Gabi1801g00001 80 Gene3D - 33 79 IPR036574 -
Gabi1801g00001 80 SMART gth_4 34 79 IPR003614 GO:0006952
Gabi1801g00001 80 PRINTS Purothionin signature 34 49 IPR008176 GO:0006952
Gabi1801g00001 80 PRINTS Purothionin signature 64 78 IPR008176 GO:0006952
Gabi1801g00001 80 ProSitePatterns Gamma-thionins family signature. 33 56 IPR008176 GO:0006952
Gabi1801g00001 80 CDD Knot1 44 76 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1801g00001 Gabi-Chr1801 6206 6934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1801g00001 5 79 Plant Defensins Gene Families AT2G02100 62.667 1.46e-30 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1801g00001 - - gsj:114420878 100.138