Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1800g00022 ATGGATAATAAGTCAAGTACAACCAAATCTTCAATCACTAAGCTCTCTGTGGACGAGATACTGGAATTGGAAAGAATGTACATCGAGATGGGAGGAAAAACACTTGATCGGAATTTCTGCAAGAAGATTGCTAAAAGTTTTAGTTCCTCATCAGAACATGCCGGTATAACTTCCTTATCATGGAAACAGGTGCATCAGTGGTTCCAAAATAAACATAAAAAGTCGCAGGCTGAAGATACTTCGTCACCAGAAGCGCTGAAACTATCTGTTGATATTTCAGATACATCTAATTTAAGAAAAGAACATAAAAGCTTTCCATGTACTGAAGGTGAACAAGTTGCAGATATATCGGAGTTGACATTTGAAGCAAGATCTTCAAAAGACTCTGCATGGCATGATGTTGCAATGTTTCTTAACTTTAGGGTCTTGAGCAAAGGCGAACTTTTGAAGTTAATGGATCTTGTTACACAAATTAAGGAAGTTCGCGTACGATATTCTGGATTTGGTAAGGAGCAGGATGAGTGGGTAAATGTGAATCAGGAGTTGCGTGTGAGATCCATCCCATTAGTACCTTCAGAATGTCATAAGGTGAAGGATGGAGATCTTATACTTTGTTTCGTGGAAAAAGATGATTATGCCCTCTATTGTGATGCTCGTGTTGTAGAAATCCAGAGAAGGTTACATGATCCAACAGAGTGTACGTGCATCTTCATTGTCCGATATGTCCATGACAACACTGAGTTTCTTGGAACAGGTTATGCTGTAGGCCTACGCAAGAGGAACCTGTGGTCTCCCCGATGCCCATCCAAAATCCTATAG 819 0.4005 MDNKSSTTKSSITKLSVDEILELERMYIEMGGKTLDRNFCKKIAKSFSSSSEHAGITSLSWKQVHQWFQNKHKKSQAEDTSSPEALKLSVDISDTSNLRKEHKSFPCTEGEQVADISELTFEARSSKDSAWHDVAMFLNFRVLSKGELLKLMDLVTQIKEVRVRYSGFGKEQDEWVNVNQELRVRSIPLVPSECHKVKDGDLILCFVEKDDYALYCDARVVEIQRRLHDPTECTCIFIVRYVHDNTEFLGTGYAVGLRKRNLWSPRCPSKIL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1800g00022 272 Gene3D - 116 188 - -
Gabi1800g00022 272 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 14 259 IPR039276 -
Gabi1800g00022 272 ProSiteProfiles 'Homeobox' domain profile. 6 78 IPR001356 GO:0003677
Gabi1800g00022 272 SUPERFAMILY Homeodomain-like 9 75 IPR009057 -
Gabi1800g00022 272 Gene3D - 189 252 - -
Gabi1800g00022 272 Pfam SAWADEE domain 118 245 IPR032001 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1800g00022 Gabi-Chr1800 234378 238213 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi1800g00022 SAWADEE 8.3e-36 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1800g00022 - - gmx:100800332 290.812