Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi1800g00016 | ATGACTCGGCGATGCTCTAACTGCAGCAACAATGGCCACAACTCACGAACATGTCCATCTCGCACTGTCAAGCTTTTCGGTGTGAGGATGAGCATCACCGACGGTGGATCCATCATGAAGAAGAGCGCCAGCATGGGCAACCTCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCTTCCCCCTCCTCCGACGGCTACTTGTCCGATCACCCCTCCTCTTCCCCTCTAAGAAAGAAAGGTGTTCCATGGACTGAAGAGGAACATCGAATGTTCTTGATTGGTCTCCAGAATCTGGGCAAAGGAGACTGGCGTGGAATAGCACGTAATTTTGTTGTGTCAAGGACCCCTGCTCAAGTTGCAAGTCATGCCCAGAAATACTTTATCAGACAGAGTAACGCTACCCGAAGAAAGAGACGTTCAAGTCTTTTTGACATGATTCCAGATATGGCTTCAGATCCACCTTCCGTGCCAGAAGAACAAGTACTATTGCCACCTTCTGAGAATGCACAGCCTAGTAACGCAGAATCACAGCCTTCATTAAATCTCTCTCTCAAGTCAGATTTTGAACCAATGGAAACTACTTCTCAAGAAAATGTGGAAGAGCCCAATGAAACTATGATTGGATCAAATGGAGAGATACCAGTGCCTCCTGAATTCTTCCCAACTTATTTACCTCTCCCATTTTCCATATGGCCATCAAATGCAGCTTCCTTTGAAGAAGTTAACGGAGCTGAAACATTGCATCATCGGGTCCTCAAGCCAATCCCGGTCATTCCCAAGGAACCTGTGAATGTTGATGAACTCGTGGGAATGTCTCAGCTGAGTATTGGTGAAACACAGGTACGTGATAGAGAGCCTTCTCCACTTTCCTTAAACTTGTTAGGAGAGCCGTCAAGGCAGTCAGCATTTCAAGCAAAGACTCCAGTTGGAGGTTCTGATATATAG | 942 | 0.4766 | MTRRCSNCSNNGHNSRTCPSRTVKLFGVRMSITDGGSIMKKSASMGNLSSSSSAAAAASPSSDGYLSDHPSSSPLRKKGVPWTEEEHRMFLIGLQNLGKGDWRGIARNFVVSRTPAQVASHAQKYFIRQSNATRRKRRSSLFDMIPDMASDPPSVPEEQVLLPPSENAQPSNAESQPSLNLSLKSDFEPMETTSQENVEEPNETMIGSNGEIPVPPEFFPTYLPLPFSIWPSNAASFEEVNGAETLHHRVLKPIPVIPKEPVNVDELVGMSQLSIGETQVRDREPSPLSLNLLGEPSRQSAFQAKTPVGGSDI | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi1800g00016 | 313 | MobiDBLite | consensus disorder prediction | 144 | 179 | - | - | |
| Gabi1800g00016 | 313 | Pfam | Myb-like DNA-binding domain | 81 | 126 | IPR001005 | - | |
| Gabi1800g00016 | 313 | MobiDBLite | consensus disorder prediction | 164 | 179 | - | - | |
| Gabi1800g00016 | 313 | SMART | sant | 78 | 128 | IPR001005 | - | |
| Gabi1800g00016 | 313 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 3 | 211 | - | - | |
| Gabi1800g00016 | 313 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 77 | 129 | IPR006447 | GO:0003677 | |
| Gabi1800g00016 | 313 | Gene3D | - | 80 | 131 | - | - | |
| Gabi1800g00016 | 313 | SUPERFAMILY | Homeodomain-like | 75 | 131 | IPR009057 | - | |
| Gabi1800g00016 | 313 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 76 | 130 | IPR017930 | - | |
| Gabi1800g00016 | 313 | MobiDBLite | consensus disorder prediction | 292 | 306 | - | - | |
| Gabi1800g00016 | 313 | MobiDBLite | consensus disorder prediction | 278 | 313 | - | - | |
| Gabi1800g00016 | 313 | MobiDBLite | consensus disorder prediction | 51 | 69 | - | - | |
| Gabi1800g00016 | 313 | CDD | SANT | 81 | 126 | IPR001005 | - | |
| Gabi1800g00016 | 313 | ProSiteProfiles | Myb-like domain profile. | 81 | 126 | IPR001005 | - | |
| Gabi1800g00016 | 313 | ProSiteProfiles | Zinc finger CCHC-type profile. | 3 | 20 | IPR001878 | GO:0003676|GO:0008270 | |
| Gabi1800g00016 | 313 | MobiDBLite | consensus disorder prediction | 51 | 79 | - | - | |
| Gabi1800g00016 | 313 | FunFam | transcription factor MYB1R1 | 80 | 131 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi1800g00016 | Gabi-Chr1800 | 154694 | 156906 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Gabi1800g00016 | Myb_DNA-binding | 1.3e-09 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi1800g00016 | - | - | gmx:778036 | 442.965 |