Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1800g00010 ATGATGACTCTTGAACGAAAACCTCATTGGAAGTTGCTTCACTTTCTTCTCTTTCTGCTTCTTCACCTTCATTGCAGCAGGACCAGTTCTTCTTACCCGATGAATCCCATGAACTGTACTGACACAAGCCGTGTTTGCACTTCATTCATGGCCTATAAGCCTAAACCAAACCAGACATTGGCGGTGATAGAGAGCATGTTTGATGTGTTGCCCGGTGACATCACCGTTGAAGGCAATGACTGGGATTACATATTCATAAGGAAAAACTGTTCTTGTGCTGCTGGTATTGATAAGTACTTGTCTAGCACCACCTTCACTGTGAAATCCAATAAAGGGTTGGTGTATGATATGGTGATGGATGCTTATGATGGGCTTGCTTTCCTTCCCAACACCACCAGGAGAGCAAGGAATGGTGCTGTTGTATCACTGAGGTTGTTTTGTGGCTGCTCCAGTGGACTGTGGAACTATCTGCTGAGTTATGTCATGAGAGATGGGGATAGTGTTGAATCATTGGCAAGTAGGTTCGGGGTTAGTATGGATAGCATTGAGACAGTAAATGGCATCGATGATCCTGATAATGTCACTGTTGGTTCACTTTATTATATACCTCTGAATTCGGTTCCTGGTGATCCTTATCCCCTGAACAATGCTACTCCTCCAGCTCCTGTTCCTGCCCCATCTGTTGATAATTCTTCAGGTGATCAAGTCAATCATAATGCTCATGTACCCTATGGTTGGATCATTGGGGGTTTAGGAGCTGGTCTTGTTCTGATAATATTAAGCGTAATTCTCTATGTTTGCCTGAGATCATCAAATTGTTTTGCTGATGCCAGAAGTCATGAAAAAGATGATGAGGGAAAGATCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGAACAGAAGCAAACAGATGGTGAATCCAGCAATCACACGGTTACGGTTCCCAAAGTTTCAACTCTGGGGCCTGATGTATTCGACATGGAGAAGCCTGTAGTTTTTACATATGAAGAGATTTTTTCCTCAACTGATGGTTTCTCTGATCCAAATCTACTCGGGCATGGAACATATGGTTCTGTTTACTATAGCCTCCTCCGGGATCAGGAAGTTGCTATTAAAAGAATGACAGCTACAAAAACAAGAGAGTTTATGTCAGAGATGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAGTTGATTGGCTATGCAGCTAGTCATGATGAGCTTTTCCTTGTTTATGAATATGCTCAGAAGGGTTCACTCAGAAGCCATTTACATGATCCTCAAAATAAGGGTCATTCCTCGCTTTCTTGGATCATGAGGGTCCAGATTGCGCTTGATGCTGCTCGTGGCCTTGAATACATACATGAGCACACAAAAGCTCATTATGTTCACCGAGATATCAAAACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGAAAACAAATGAGGGAGAAATTTCAACTACTAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATACTTGAGTGATGGCCTTGCAACAACCAAAAGTGATGTCTATGCATTTGGTGTTGTCCTTTTTGAGATTATTTCTGGAAAGGAGGCCATTATTCTAACAGAAGGCGCAATGACAAAAAATCCTGATAGACGTTCACTGGCATCCATAATGTTGGCAGTTCTCAGGAACTCACCTGATTCCATGAGCATGTCAAGCATGATAGATTATATTGATCCAAATATGATGAATCTGTATCCCCATGATTGTGTATTTAAGATGGCCATGCTGGCAAAGCAATGTGTGGATGATGATCCCATCTTGAGACCTGACATGAAACAAGTTGTGATTTCCCTCTCACAGATTCTCTTGTCTACTGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 2013 0.4178 MMTLERKPHWKLLHFLLFLLLHLHCSRTSSSYPMNPMNCTDTSRVCTSFMAYKPKPNQTLAVIESMFDVLPGDITVEGNDWDYIFIRKNCSCAAGIDKYLSSTTFTVKSNKGLVYDMVMDAYDGLAFLPNTTRRARNGAVVSLRLFCGCSSGLWNYLLSYVMRDGDSVESLASRFGVSMDSIETVNGIDDPDNVTVGSLYYIPLNSVPGDPYPLNNATPPAPVPAPSVDNSSGDQVNHNAHVPYGWIIGGLGAGLVLIILSVILYVCLRSSNCFADARSHEKDDEGKISHKFHILRNPSFFCGSGRYICGKHVEQKQTDGESSNHTVTVPKVSTLGPDVFDMEKPVVFTYEEIFSSTDGFSDPNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTREFMSEMKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHDPQNKGHSSLSWIMRVQIALDAARGLEYIHEHTKAHYVHRDIKTSNILLDASFRAKISDFGLAKLVGKTNEGEISTTKVVGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKEAIILTEGAMTKNPDRRSLASIMLAVLRNSPDSMSMSSMIDYIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISLSQILLSTVEWEATLAGNSQVFSGLVQGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1800g00010 670 ProSiteProfiles LysM domain profile. 158 202 IPR018392 -
Gabi1800g00010 670 SUPERFAMILY LysM domain 159 203 IPR036779 -
Gabi1800g00010 670 SUPERFAMILY Protein kinase-like (PK-like) 339 642 IPR011009 -
Gabi1800g00010 670 SMART LysM_2 159 203 IPR018392 -
Gabi1800g00010 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Gabi1800g00010 670 SMART serkin_6 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1800g00010 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 41 664 IPR044812 GO:0019199|GO:0045087
Gabi1800g00010 670 Gene3D Phosphorylase Kinase; domain 1 336 431 - -
Gabi1800g00010 670 Gene3D Transferase(Phosphotransferase) domain 1 433 657 - -
Gabi1800g00010 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1800g00010 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524
Gabi1800g00010 670 Pfam LysM domain 160 197 IPR018392 -
Gabi1800g00010 670 FunFam Kinase family protein 335 431 - -
Gabi1800g00010 670 Gene3D LysM domain 155 209 IPR036779 -
Gabi1800g00010 670 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Gabi1800g00010 670 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1800g00010 Gabi-Chr1800 117706 125878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1800g00010 36 670 Receptor kinase-like Gene Family AT1G51940 69.051 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi1800g00010 PK_Tyr_Ser-Thr 5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1800g00010 - - gmx:100796989 1144.8