Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1800g00009 ATGTGGCAAAGAAGCCACAAGTCTTCAGAGGAGAGGAAACTTGAGCTTAGACTTGGTCCACCTGGTGAAGAGTCTCTCATTGAAAACATTAAAAGAGAAAGAGATGAATCACCACTCCCTCTTGGTTACTTCTCAACTCAGAAAATATCTACTTCTGATTCCACATGCTACCACCGGCATAATCAATACCATGCTAAAGCTAAAGCTTCATCAGTTCTTCAGCTCCCTTCAAGCCCACAGAAAAGAAATGCTCCTGTTCCAGTAGTGGGTTGGCCTCCAATTCGTTCTTTCAGGAAGAACCTTGCAAGTGGAAGCTCTTCTAAGCAGTCTTCTGAGTCCCACCAACAACATCAGCATGTTGTTCCAGACAAGGTTGCTGCTGGTAAAAAACCTATTGACAACTCAGGTAAAAGCATGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAATGCTTACGATAGCTATGAAAAACTTTCCTCAGCTATTGACGAGCTCTTTAGAGGCCTCCTTGCAGAGATAAATTTATGTCACAATGTCTTCCCCCTCGGATGTTCTACTCAAAGTGATTCCTCTGCTGTTGGAAATCACAAGAAGCAAGAGGGAGAGAAAGCAATTAAGGGTTTATTGGTTGGAAGTGGGGAATATACTCTTGTTTATGAAGATAATGAAGGAGACAAGATGCTTGTTGGGGATGTGCCATGGCACATGTTCGCATCAACAGTGAAGAGGCTGCGTGTGTTGAAGAGTTCTGATCTTCCTGCTTTTACCCTTGGTAGCAAGCAAAACAAGACACCCCACTTGACCCGGCAATGA 834 0.4353 MWQRSHKSSEERKLELRLGPPGEESLIENIKRERDESPLPLGYFSTQKISTSDSTCYHRHNQYHAKAKASSVLQLPSSPQKRNAPVPVVGWPPIRSFRKNLASGSSSKQSSESHQQHQHVVPDKVAAGKKPIDNSGKSMFVKINMDGVPIGRKVDINAYDSYEKLSSAIDELFRGLLAEINLCHNVFPLGCSTQSDSSAVGNHKKQEGEKAIKGLLVGSGEYTLVYEDNEGDKMLVGDVPWHMFASTVKRLRVLKSSDLPAFTLGSKQNKTPHLTRQ 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1800g00009 277 FunFam Auxin-responsive protein 133 268 - -
Gabi1800g00009 277 SUPERFAMILY CAD & PB1 domains 134 253 - -
Gabi1800g00009 277 Gene3D - 133 267 - -
Gabi1800g00009 277 Pfam AUX/IAA family 14 259 IPR033389 -
Gabi1800g00009 277 MobiDBLite consensus disorder prediction 68 131 - -
Gabi1800g00009 277 MobiDBLite consensus disorder prediction 1 23 - -
Gabi1800g00009 277 ProSiteProfiles PB1 domain profile. 138 256 IPR000270 GO:0005515
Gabi1800g00009 277 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 258 IPR003311 GO:0005634|GO:0006355
Gabi1800g00009 277 MobiDBLite consensus disorder prediction 99 116 - -
Gabi1800g00009 277 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1800g00009 Gabi-Chr1800 105686 108722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1800g00009 79 267 B3 DNA Binding Superfamily AT4G23980 27.320 4.96e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi1800g00009 AUX_IAA 7.6e-65 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1800g00009 K14484 - gmx:100793822 350.132