Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1800g00004 ATGGGCAAAGCTAGCAGGTGGTTGAAGGGCTTGTTGGGCATGAAGAAGGAGAAGGACCACAGTGACAATTCGGGGTCATTGGCTCCTGACAAGAAGGAGAAGAAAAGGTGGAGTTTTACTAAGCAAGGAAAGGATATGGTGTCTCACATTGCTCCCACTAGTGTTCCACCTACTGATAATACCTGGCTTAGATCCTATATTGCTGAGACAGAGAATGAGCAGAACAAACATGCAATTGCTGTGGCAGCCGCCACAGCCGCCGCCGCGGATGCCGCCGTGGCAGCCGCACAGGCGGCGGTGGCGGTTGTGAGGCTAACAAGCCAGGGCAGAGGTACATTGTTCAGTGGGAGCAGAGAGAAGTGGGGTGCTGTGAAGATCCAAACTTTTTTCAGAGGTTATTTGGCACGGAAGGCTCTTAGAGCACTGAAAGGATTGGTCAAGATACAAGCTCTTGTTAGAGGCTATCTAGTAAGAAAAAGAGCTGCTGCAACTCTTCACAGTATGCAAGCTCTAATAAGAGCTCAAGCTAATGTCAGAACACAGCGAGCGCGTCGTTCCATGAGCAAAGAAAATAGATATCTACCTGAAGTTATTGCAAGAAAATCTGTGGAACGATTTGATGAAACGAGAAGTGAATTCCATAGTAAAAGGTTACCTACTTCTTATGAAGCATCATTGAATGGATATGATGAAAGCCCCAAAATTGTTGAAATTGACACTTACAAGACAAGGTCAAGATCAAGGCGCTTTACATCTACAATGTCTGAATATGGAGAAGAACTTCCATGTCATGCAATCTCATCCCCTCTTCCATGTCCTGTTCTGGGTAGAATCTCTGTTCCTGATTGCAAACATGTTCAAGATTATGATTGGTACTTCAATGTTGAGGAGTGTAGGTTCTCCACAGCACATAGCACCCCTCGTTTCACAGGTTTAGTGCGTCCTAATGCTCCAGCTACACCAGCCAAGAGTGTTTGTGGAGACACCTTCTTCAGACCTTACTCCAATTTCCCAAACTACATGTCCAATACTCAGTCATTTAAGGCAAAACTAAGGTCTCTCAGTGCTCCAAAGCAAAGACCTGAACCCAAAAAAAGGCTTTCACTCAATGAAATGATGGCAGCAAGAAATAGCATAAGTGGTGTTAGAATGCAAAGGCCATCCAATTTCCAAGCACAAGAATCCTGGAATTTTTGA 1197 0.4495 MGKASRWLKGLLGMKKEKDHSDNSGSLAPDKKEKKRWSFTKQGKDMVSHIAPTSVPPTDNTWLRSYIAETENEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGTLFSGSREKWGAVKIQTFFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQANVRTQRARRSMSKENRYLPEVIARKSVERFDETRSEFHSKRLPTSYEASLNGYDESPKIVEIDTYKTRSRSRRFTSTMSEYGEELPCHAISSPLPCPVLGRISVPDCKHVQDYDWYFNVEECRFSTAHSTPRFTGLVRPNAPATPAKSVCGDTFFRPYSNFPNYMSNTQSFKAKLRSLSAPKQRPEPKKRLSLNEMMAARNSISGVRMQRPSNFQAQESWNF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1800g00004 398 MobiDBLite consensus disorder prediction 1 42 - -
Gabi1800g00004 398 PANTHER IQ-DOMAIN 5-RELATED 1 370 - -
Gabi1800g00004 398 Pfam Protein of unknown function (DUF4005) 320 380 IPR025064 -
Gabi1800g00004 398 Pfam IQ calmodulin-binding motif 122 140 IPR000048 GO:0005515
Gabi1800g00004 398 Pfam IQ calmodulin-binding motif 146 160 IPR000048 GO:0005515
Gabi1800g00004 398 ProSiteProfiles IQ motif profile. 119 147 IPR000048 GO:0005515
Gabi1800g00004 398 ProSiteProfiles IQ motif profile. 143 170 IPR000048 GO:0005515
Gabi1800g00004 398 MobiDBLite consensus disorder prediction 10 42 - -
Gabi1800g00004 398 Gene3D - 61 144 - -
Gabi1800g00004 398 ProSiteProfiles IQ motif profile. 167 196 IPR000048 GO:0005515
Gabi1800g00004 398 SMART iq_5 141 162 IPR000048 GO:0005515
Gabi1800g00004 398 SMART iq_5 118 140 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1800g00004 Gabi-Chr1800 69059 70864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1800g00004 1 384 IQD Protein Family AT3G16490 55.025 3.01e-108 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1800g00004 - - gmx:100797686 653.669