Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1800g00001 ATGAGTTCAAAATATGATTTTCTGAAGGATGTTAATCCTGCCAAGGAGGACTGGAGGATTAAGGTGAAGGTGGTTCGGACTTGGAAAGTTCCTAACTTTCAGCGTAAAAATTTGGAGGACAATCTTGAAATGGTTTTATTGGATGAACAGGGTGGTAGGATCCACGCCACTGTCAAAGACGTCATTGGTTTAATCTCAGGAATTGGGAAAGTTTGTGATCGTGTGGTTTCTGGTAGGAAGACAAAAATGGTGGTGTTGGAGCTTGACGACCTGAGGGGTCATAAGTTGGAGTGCACTTTGTGGGAGCATTATGTGGATGAGGTCCAATCTTTTTTGGCAGACAACGACGATCCTCATAACGTCCTGATAGTCCAACTGGGAAGGATTAAGTGTTTTAGAGGTAAGGTCGGGATAACAAATACAAAATATACAACAAGGATTGTAATGGATTCAAAACTGAATGAGATTGTTGAGTTCAAAAAACGTCTCTCGATTGATGGTGTGGAAAGTAGTACAAGGATGACTCAATTGTCTACTCAGTCATCCTATTCTTTCGAAAATGATTTTCTTAAGGAGACTGAAAAAAAGTCTATCAGTGATGTGAAACTTTGTGTTGAGGTAACTACCTGCATCACATACGGGACTATAAAGGCAATTGAGAGCAAATACAACTGGTGGTACAAGTCATGCAAAAAGTGTCCATTTTCCGTTTATGAGGATTTTGAGAAGTGGTATTGTAAGAACTGCCAAAAACATTGGGAAGATTATTATCCGAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACAGATTCCGCATCCTTTATTCTGTTTGATCGCGACTGTGTGTCTTTGTTGGGAATGAGTGCTGCTGAATTGCGCGAGCTGCATTTCAAGAGGGGTGCCGATTTGGATCAATTTCCAAATGAGTTAAATGTTCTGAATGAAAAGTCAATGTTGTTCAAGATAAATGTTAAGCAAAAGGATTTGAACACAAATAGTGAGCCCAAATATCAAGTTTCCAAAATTTGTATCAGCGAAGACATAATCTCAGCGTTCATTAAGTCTCTTATAGATCCAAATGATGAAGCAAATTTCGATAATGCACGCGAAAATGAAGTTGTTTCGTCGGAACTGGAAAAGGCTGCG 1149 0.3951 MSSKYDFLKDVNPAKEDWRIKVKVVRTWKVPNFQRKNLEDNLEMVLLDEQGGRIHATVKDVIGLISGIGKVCDRVVSGRKTKMVVLELDDLRGHKLECTLWEHYVDEVQSFLADNDDPHNVLIVQLGRIKCFRGKVGITNTKYTTRIVMDSKLNEIVEFKKRLSIDGVESSTRMTQLSTQSSYSFENDFLKETEKKSISDVKLCVEVTTCITYGTIKAIESKYNWWYKSCKKCPFSVYEDFEKWYCKNCQKHWEDYYPRFSVQVRVVDNTDSASFILFDRDCVSLLGMSAAELRELHFKRGADLDQFPNELNVLNEKSMLFKINVKQKDLNTNSEPKYQVSKICISEDIISAFIKSLIDPNDEANFDNARENEVVSSELEKAA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1800g00001 383 SUPERFAMILY Nucleic acid-binding proteins 208 344 IPR012340 -
Gabi1800g00001 383 Gene3D - 32 173 IPR012340 -
Gabi1800g00001 383 Pfam Replication factor-A C terminal domain 212 343 IPR013955 -
Gabi1800g00001 383 SUPERFAMILY Nucleic acid-binding proteins 58 168 IPR012340 -
Gabi1800g00001 383 SUPERFAMILY Nucleic acid-binding proteins 6 59 IPR012340 -
Gabi1800g00001 383 PANTHER OS03G0429900 PROTEIN 8 346 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1800g00001 383 CDD RPA1_DBD_C 210 359 IPR047192 -
Gabi1800g00001 383 CDD RPA1_DBD_B_like 60 163 - -
Gabi1800g00001 383 Gene3D - 174 350 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1800g00001 Gabi-Chr1800 1003 3491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1800g00001 39 343 Core DNA Replication Machinery Family AT5G08020 24.138 8.89e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1800g00001 - - ahf:112707100 216.468