Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi179g00011 ATGGATGGGAAGGCTAACCTTCCGATCAACCCGCCGGATTCTTCCCCGCCGGACTTCCTCCGCCACGTCCAAGCCGCCTTGAAGCGCCACCGTCCTCTCGGCACAATGCAGTCCAATTGTATAAGGCCAAGGCGCACGCTGCTTCCTCAACGAAATGTGTCAAATAAGTCTCAGGGGGACACGTCGTTGAAGGAATCACTCGCACTCAGAAACAACACTGACTCTGCTGATTCGTCAATTTCAAGTGAAAGCAACATTGTCATGCCTTCTCAAAATGTAGATACTCAGAAGAAAGTTCACTTTAGCAACATTGCTCCACAGGGTAATTCTCTTTATATCTTTCCCCTTTTTAATTTCTTATGTTTTGTTTATGCATATTCCAAACTTGTCACTGTTCCCCATGCAGAGGCACATGATGTAAAGGCCACTGAGTTGGATAACTTAACATCTTATATGAGTTCACTTGGATTCGCAGAAATGGAGTGGGTTGAAAGCAGCCAACTTGAAGGATCAATTGGATTCAATCAAGATTCAAAGCACCAAAAAATTCAGGATGGAGGAATAAGCTCTATGCTGCCAAAGAGAACGACGGTTACTCAGGATCATATGCAGCAATTCGGAAACTTTTTAAGTCAGCCAGCGACACAATCTTCAGTTGCTGGACCTTCGTGTGCTACAACTACCTCGGTCCATTCAACTTCAGCTCCCATGCTGAATTCAACAACCTGTTATTCTCATTCACATCCAGACAGTGGCTCACGTGTGGCTGCTGAACCTTTGGGGGAGCTTAATGTTAATCCCCATCCTATAACTGAAAGGGTTAGGAAATCACCAAATACTTCCCTGAAAAACCCTGATAGAATGTCAGTTGATCAGGCAACGATTGCAGCCCAAGCTTCGGATTCTTCTATTGATGCAGAGCTGGCATTTAAGGAAAGCGACCAATCTAAGGAGCAACAAGGATGCATTTTAAAAGAAACCAGCAATTCTTGTCATGAAGACAAGTCAAATAAAGGGAAAGAGCCTGCAGATGTTGCCAACGCTCAACCTCAGGTTCCAATGCCCAAAACCTCATCTTCAGATGTGAAGTTGGAGTCTTCCAACTTAGAAAAAAGAGAGAAGGCTACAAGTAGTAAAGGTTCATCAGCAGCTGCTCGGAAAAGGTCCTATGACCCTGATATGTTTTTTAAAGTCAATGGCAAGCTTTACCAACGGCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAAGTGCACAAAGTGATTTCATCAGACTGTAGGATCTATGCACTTAAAAAGATCAAGCTCAAGGGTCGTGATTACACTACTGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAATAGGCTGAAAGGAAAGGATAATATTATACAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAGGAAGTCATGAAGGGCTCCTTCAGTAATAAAGATGGCCGATTCAAGGATGATGGATATATATACATGGTACTTGAATATGGGGAAATCGATTTGGCTCACATGTTGTCCCAGAAGTGGAAGGAACTTGATGGATACAACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACTATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCAGCTAACTTCCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGCATAGCCAAAGCAATAATGAGTGATACAACTAACATCCAACGGGATTCACAGGTAGGTACTCTGAGTTACATGTCTCCAGAGGCGTTCATGTGTAATGAGTCTGATGCGAACGGAAACATCATAAAGTGCGGTCGGCCATCAGATATATGGTCCCTGGGCTGCATCCTTTATCAGATGGTATATGGGAGAACACCTTTTTCTGAGTATAAGACGTTTTGGTCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTATGTATGAACCAGTTTCAAATCCATGGCTTATGGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCATGTCATCCATCTTTGTCCCAAGACCATAGCTGTAAATTGTTACAACTTATTGCTGAAACTTGTACAGATGACCCAGAAGCATCCCAGTTGTGTTTTCAGCTCCAACGGCTTCTTGGTGATCCACTCAAGTTAATAACTCCTCACTCACTAAATTCACGAGATCAACAGCGAAAACTGTTGTCCCGAATATCAGAACTCTCTACACAGCTGCAGGAACGTTTGACGAATACTGGTAACAAGTAG 2346 0.4292 MDGKANLPINPPDSSPPDFLRHVQAALKRHRPLGTMQSNCIRPRRTLLPQRNVSNKSQGDTSLKESLALRNNTDSADSSISSESNIVMPSQNVDTQKKVHFSNIAPQGNSLYIFPLFNFLCFVYAYSKLVTVPHAEAHDVKATELDNLTSYMSSLGFAEMEWVESSQLEGSIGFNQDSKHQKIQDGGISSMLPKRTTVTQDHMQQFGNFLSQPATQSSVAGPSCATTTSVHSTSAPMLNSTTCYSHSHPDSGSRVAAEPLGELNVNPHPITERVRKSPNTSLKNPDRMSVDQATIAAQASDSSIDAELAFKESDQSKEQQGCILKETSNSCHEDKSNKGKEPADVANAQPQVPMPKTSSSDVKLESSNLEKREKATSSKGSSAAARKRSYDPDMFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYTTAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSFSNKDGRFKDDGYIYMVLEYGEIDLAHMLSQKWKELDGYNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNESDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWSKFKVITDPNHEIMYEPVSNPWLMDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPCHPSLSQDHSCKLLQLIAETCTDDPEASQLCFQLQRLLGDPLKLITPHSLNSRDQQRKLLSRISELSTQLQERLTNTGNK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi179g00011 781 MobiDBLite consensus disorder prediction 39 91 - -
Gabi179g00011 781 MobiDBLite consensus disorder prediction 273 287 - -
Gabi179g00011 781 SMART serkin_6 403 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi179g00011 781 Gene3D Transferase(Phosphotransferase) domain 1 518 698 - -
Gabi179g00011 781 ProSitePatterns Protein kinases ATP-binding region signature. 409 431 IPR017441 GO:0005524
Gabi179g00011 781 MobiDBLite consensus disorder prediction 33 91 - -
Gabi179g00011 781 SUPERFAMILY Protein kinase-like (PK-like) 398 704 IPR011009 -
Gabi179g00011 781 ProSiteProfiles Protein kinase domain profile. 403 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi179g00011 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672|GO:0006468
Gabi179g00011 781 PANTHER MIXED LINEAGE PROTEIN KINASE 57 729 - -
Gabi179g00011 781 FunFam serine/threonine-protein kinase mph1 isoform X1 517 699 - -
Gabi179g00011 781 Pfam Protein kinase domain 403 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi179g00011 781 MobiDBLite consensus disorder prediction 263 287 - -
Gabi179g00011 781 FunFam serine/threonine-protein kinase mph1 isoform X2 396 483 - -
Gabi179g00011 781 MobiDBLite consensus disorder prediction 325 386 - -
Gabi179g00011 781 Gene3D Phosphorylase Kinase; domain 1 396 482 - -
Gabi179g00011 781 CDD PKc_Mps1 401 696 IPR027084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi179g00011 Gabi-Chr179 127375 133922 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi179g00011 404 697 MAP Kinase Kinase Gene Family AT3G21220 29.180 1.01e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Gabi179g00011 Pkinase 2.1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi179g00011 K08866 - gmx:100780144 1060.83