Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi179g00010 ATGGAAGATTTGCAGAGTGCCTTGGAGGATCGTAATTTAACAGTTTCCACCGTCCCACAAAAGGGTCGTTCTCTCTTTGCTACGAGGGATTTCTACCCAGGTGAGGTGATTATAAGTCAAGAGCCTTATGTTTGTGTGCCAAATAATTCCTCAGCTCAGAAAAGGTGTGATGGATGTTTCACAACATCTAACCTTAGGAAGTGCTCACGTTGTCAAGTTGTATGGTATTGTGGAACCCCATGTCAGAAGTCAGAGTGGAAGTTGCATAGTCTTGAATGTGACGCCCTCTCAAGGGTAGACAAGGACAAGAGAAAATCTGTGACACCATCCATACGGCTGATGGTGAAACTTTATCTTCGAAGGAAGTTGCAAAATGAGAAGATCATCCCAAGCACTGCTATGGACAACTACAATTTGGTGGAGGCATTAGTGTCTCACATGTCTGAAATTGGTGAGGAGCTGCTGGTTCTGTACGCACAGATGGCTAATCTTGTAAACTTCATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACTGGATTGTATCCTGTTATTTCCATTATCAATCACAGCTGCTTGCCCAATTCCGTGTTGGTTTTTGAGGGAAGGTCAGCATCGGTACGTGCCGTGCAGCATGTACCCAAAGGTACTGAGGTACTGATAAGTTACATTGAGACCGCTGGAAGCACTATAGCTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACATGTCTCCGATGTTCTAAAGTGGGTCAGTATGATGATATCCGAGAAAATGCAATCCTAGAAGGATACAGATGCAAAAATGAAAAATGTGATGGTTTCTTGCTTCGGACAACTGATGGAGAAGGATTCCAATGCCAAGAATGTGGACTAGTTAGGGACAAGGAAGAGATAAAGAAAATTGCAACTGAAATAAAATCGCTATCAGAAGAAGTTTCTAGGCCTTCTTCCACTGGAAATTATCAAGAAGCTATTTCCATATATAAAATGATTGAGAAACTGCAAACAAAACTCTATCATCCTTTCTCAATCAACTTGATGCAAACTCGAGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACATTGGAGTGATGCTTTAGCATACTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCAACTGTTCACCCTCTGCTTGGTTTACAATATTATACTTGTGGAAAACTCGGATGGTATCTGAGAGAGACAGAGGAAGCTGTTAAATCACTAACTAAGGCGGTGGATATACTACGGATTACTCATGGCACAAATACACCATTCATGAAGGAACTCTTGATGAAGTTGGAAGAAGCACGTGCTGAAGCATCATCTTACAAATTATCCTCAAAAGAGTAG 1446 0.4115 MEDLQSALEDRNLTVSTVPQKGRSLFATRDFYPGEVIISQEPYVCVPNNSSAQKRCDGCFTTSNLRKCSRCQVVWYCGTPCQKSEWKLHSLECDALSRVDKDKRKSVTPSIRLMVKLYLRRKLQNEKIIPSTAMDNYNLVEALVSHMSEIGEELLVLYAQMANLVNFILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSASVRAVQHVPKGTEVLISYIETAGSTIARQKALKEQYLFTCTCLRCSKVGQYDDIRENAILEGYRCKNEKCDGFLLRTTDGEGFQCQECGLVRDKEEIKKIATEIKSLSEEVSRPSSTGNYQEAISIYKMIEKLQTKLYHPFSINLMQTREKILKSLMELEHWSDALAYCKLTIPIYQRVYPTVHPLLGLQYYTCGKLGWYLRETEEAVKSLTKAVDILRITHGTNTPFMKELLMKLEEARAEASSYKLSSKE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi179g00010 481 ProSiteProfiles Zinc finger MYND-type profile. 56 93 IPR002893 -
Gabi179g00010 481 Gene3D - 106 190 - -
Gabi179g00010 481 ProSiteProfiles SET domain profile. 11 248 IPR001214 GO:0005515
Gabi179g00010 481 SMART set_7 11 254 IPR001214 GO:0005515
Gabi179g00010 481 SUPERFAMILY TPR-like 346 446 IPR011990 GO:0005515
Gabi179g00010 481 Coils Coil 458 478 - -
Gabi179g00010 481 Coils Coil 319 339 - -
Gabi179g00010 481 ProSitePatterns Zinc finger MYND-type signature. 56 93 IPR002893 -
Gabi179g00010 481 Pfam MYND finger 56 93 IPR002893 -
Gabi179g00010 481 Coils Coil 430 450 - -
Gabi179g00010 481 SUPERFAMILY SET domain 11 247 IPR046341 -
Gabi179g00010 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 15 467 - -
Gabi179g00010 481 Pfam SET domain 22 247 IPR001214 GO:0005515
Gabi179g00010 481 Gene3D - 55 105 - -
Gabi179g00010 481 Gene3D Tetratricopeptide repeat domain 401 478 IPR011990 GO:0005515
Gabi179g00010 481 Gene3D SET domain 24 274 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi179g00010 SET 7.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi179g00010 K11426 - gmx:100789518 804.668