Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1794g00030 ATGGATGGGGTAAAGAATCCAAGTGAGAACGGGGAACACAATCAGTTGGTGGTGGTTCCCATGCAGGTGGATGGGGTCCACTATGTAAACGGAGCTTCAGGTTCTGATGAAGGGGAAGAAACTCCACCCACTGCTTCTGCTCTGCACTCTCGAACCAGTGAACTCACCGTTTCTTTTGAAGGCGAGGTTTATGTTTTCCCAGCGGTTACGCCAGAAAAGGTGCAGGCTGTATTATTACTCTTGGGGGGGCAGGAGATGCCCAATAGCGTCCCCACCTCTGACTTTTTGCTGCAGCAAAACTGTCAGGACATTAGGGGAATAAATGATCCTTCCCGAAGTTCAAAGCTTTCACGGAGAATTGCGTCACTTGTTAGATTTCGTGAAAAACGGAAAGAGAGATGTTTTGAGAAGAAAATTCGATACACTTGTCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATTGAAAGAAGACTACAAATCTCCTGCTGAAAACTGGGATTCAAGCAACGGTACTCCTTGCCCAGAATCTATTGAACGGAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCGGCTGGTCCAAGATCTTTGTGCAATGCCTGCGGGCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAAGGACTGCCTTTGAACAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCAGAAAATTCTTGTGCTGACCAAGACGAGGAGGGAAGCCCTGAGGAAACTAAGCCTGTGCCAATAGATTCCAGACAGTCTCCTGAGAGGACAAATGAGCAGTATGTTCTCGAAACTGCGGAAGCAGTTACTGACAACCTATCCATCCAAGTGGAGAATCATGCACTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCTGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGAGCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGA 1053 0.4672 MDGVKNPSENGEHNQLVVVPMQVDGVHYVNGASGSDEGEETPPTASALHSRTSELTVSFEGEVYVFPAVTPEKVQAVLLLLGGQEMPNSVPTSDFLLQQNCQDIRGINDPSRSSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSPAENWDSSNGTPCPESIERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGRTAFEQNELDTSADIKPSTTEPENSCADQDEEGSPEETKPVPIDSRQSPERTNEQYVLETAEAVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1794g00030 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 235 - -
Gabi1794g00030 350 ProSitePatterns GATA-type zinc finger domain. 188 215 IPR000679 GO:0006355|GO:0043565
Gabi1794g00030 350 MobiDBLite consensus disorder prediction 238 284 - -
Gabi1794g00030 350 SMART GATA_3 182 235 IPR000679 GO:0006355|GO:0043565
Gabi1794g00030 350 Gene3D - 182 240 IPR013088 GO:0006355|GO:0008270
Gabi1794g00030 350 CDD ZnF_GATA 187 230 IPR000679 GO:0006355|GO:0043565
Gabi1794g00030 350 ProSiteProfiles CCT domain profile. 119 161 IPR010402 GO:0005515
Gabi1794g00030 350 ProSiteProfiles Tify domain profile. 48 83 IPR010399 -
Gabi1794g00030 350 Pfam CCT motif 119 160 IPR010402 GO:0005515
Gabi1794g00030 350 MobiDBLite consensus disorder prediction 28 48 - -
Gabi1794g00030 350 Pfam tify domain 51 82 IPR010399 -
Gabi1794g00030 350 ProSiteProfiles GATA-type zinc finger domain profile. 182 239 IPR000679 GO:0006355|GO:0043565
Gabi1794g00030 350 MobiDBLite consensus disorder prediction 238 256 - -
Gabi1794g00030 350 PANTHER GATA TRANSCRIPTION FACTOR 28 27 329 IPR045280 GO:0006355
Gabi1794g00030 350 SMART tify_2 48 83 IPR010399 -
Gabi1794g00030 350 Pfam GATA zinc finger 188 224 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1794g00030 Gabi-Chr1794 195663 202496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1794g00030 54 231 Tify Gene Family AT1G51600 59.140 2.07e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1794g00030 CCT 5.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1794g00030 - - gmx:102669848 577.015