Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1794g00015 ATGCCTAGAAAGAGGATACAGATCAAGAAAATCGATAACATAAGTTCCAGACAGGTGACTTTCTCTAAGAGGAGAAAAGGGCTTTTCAAGAAAGCTCAGGAGCTATCAACCCTTTGTGATGCAGATGTAGCACTCATTGTCTTTTCTACGACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTGTGGAACAAGTAATTGAAAGGCTTAATCGGCATTCAGCAATACATAGATTGGACCGTCCATCTATTGAGCAGCAGCTTGAGAGGGACTCTAACGACACGCTGCGCAAGAAAGTAGAAGATAATACTCGTGAAGTGAGGCAGTTGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTACAAAAACTAGAGGAACTACTCAAAAGAGGTTTGACCTGTGTTTCAAAAGCAAAGGATGAAAATGCTATGCAAGAGATCAGCACCCTTCAGAGAAAGGCAGAGGAACTGATGGAAGAAAACCAAAAATTGAAACAGGTACCGAGCCTTATACATGGACAAAGGCAACAATTGGAATGCATTATTAGCAGTTCATCTTATCTTCCTGAAGAGGATTATAGTGACACATCTCTCAAGTTGGGGTTACCTTGA 615 0.4114 MPRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADVALIVFSTTSKLFEYASSSVEQVIERLNRHSAIHRLDRPSIEQQLERDSNDTLRKKVEDNTREVRQLNGEDLQGLTLQELQKLEELLKRGLTCVSKAKDENAMQEISTLQRKAEELMEENQKLKQVPSLIHGQRQQLECIISSSSYLPEEDYSDTSLKLGLP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1794g00015 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Gabi1794g00015 204 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Gabi1794g00015 204 Coils Coil 92 112 - -
Gabi1794g00015 204 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Gabi1794g00015 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 Pfam K-box region 89 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi1794g00015 204 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Gabi1794g00015 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi1794g00015 204 FunFam Transcription factor, MADS-box 13 82 - -
Gabi1794g00015 204 Coils Coil 141 168 - -
Gabi1794g00015 204 ProSiteProfiles K-box domain profile. 85 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1794g00015 Gabi-Chr1794 72218 80320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1794g00015 1 204 MADS-box Gene Family AT4G24540 49.770 3.48e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi1794g00015 K-box 8.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1794g00015 - - aprc:113860188 294.278