Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1794g00007 ATGTGTCTTCTTAGAGACGAAATAGATGTAATGGTTTGGATGATTTTTGACATAGAGAAGGAAATGCCTAGAAAGAGGATACAGATCAAGAAAATCGATAACATAAGTTCCAGACAGGTGACTTTCTCTAAGAGGAGAAAAGGGCTTTTCAAGAAAGCTCAGGAGCTATCAACCCTTTGTGATGCAGATGTAGCACTCATTGTCTTTTCTACGACTAGCAAGCTCTTTGAGTATGCTAGTTCAAGTGTGGAACAAGTAATTGAAAGGCTTAATCGGCATTCAGCAATACATAGATTGGACCGTCCATCTATTGAGCAGCAGCTTGAGAGGGACTCTAACGACACGCTGCGCAAGAAAGTAGAAGATAATACTCGTGAAGTGAGGCAGTTGAATGGGGAAGATCTGCAAGGATTGACATTACAAGAACTACAAAAACTAGAGGAACTACTCAAAAGAGGTTTGACCTGTGTTTCAAAAGCAAAGGATGAAAATGCTATGCAAGAGATCAGCACCCTTCAGAGAAAGGCAGAGGAACTGATGGAAGAAAACCAAAAATTGAAACAGGTACCGAGCCTTATACATGGACAAAGGCAACAATTGGAATGCATTATTAGCAGTTCATCTTATCTTCCTGAAGAGGATTATAGTGACACATCTCTCAAGTTGGGGTTACCTTGA 678 0.4041 MCLLRDEIDVMVWMIFDIEKEMPRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADVALIVFSTTSKLFEYASSSVEQVIERLNRHSAIHRLDRPSIEQQLERDSNDTLRKKVEDNTREVRQLNGEDLQGLTLQELQKLEELLKRGLTCVSKAKDENAMQEISTLQRKAEELMEENQKLKQVPSLIHGQRQQLECIISSSSYLPEEDYSDTSLKLGLP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1794g00007 225 Pfam K-box region 110 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi1794g00007 225 Coils Coil 113 133 - -
Gabi1794g00007 225 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 FunFam Transcription factor, MADS-box 34 103 - -
Gabi1794g00007 225 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 Coils Coil 162 189 - -
Gabi1794g00007 225 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 180 - -
Gabi1794g00007 225 SUPERFAMILY SRF-like 24 100 IPR036879 GO:0003677|GO:0046983
Gabi1794g00007 225 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Gabi1794g00007 225 ProSiteProfiles K-box domain profile. 106 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi1794g00007 225 Gene3D - 34 113 IPR036879 GO:0003677|GO:0046983
Gabi1794g00007 225 CDD MADS_MEF2_like 24 98 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1794g00007 Gabi-Chr1794 70715 80320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1794g00007 22 225 MADS-box Gene Family AT4G24540 49.770 1.42e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi1794g00007 K-box 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1794g00007 - - aprc:113860188 302.367