Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1794g00004 ATGCAGAGTGCTCAAATAGCTAATACCCCCACTGATCAGTTCAAATTCCACATCAAAGCTCTTTTTTGCTTATATGATTCAAACTCCGACGACGCACTTAGGAGCCTAACAACCTTGACCCATTCTTGTCAAGAAATAGCTTGTCAAACCTTTTCCCAAGAAGGTCAAGATTTTCTGTGGTCCCATTTATCACACCCAAACATTCCCTCTGGAGTGCCTGATGCGATAATTCCAAGCATCATGAGTAGTGTTCAACAACTATTCGACAACAACCTTGCATTTGCAATACCTTCGGATTCGGGTTATCGAGTGTTCCATGTGCAAGTGTTCATTATAGTGGACAACGAGGAATACGATGATGTCATGCAAGCAATGATGGAAGAGTCCGCACAAGATTTTAGAATGATTCCAGCTTCCAAGAATGCTATTCATTCTCTGAAGAAGGTCAAGGTTACGAAACTGGATGAGTACTGTCCTATCTTCATGGAAGAGTTCGTTGTGAGAGCTGGTGATAATGGAGGCAAAGCAGTCTCGGCAATGCCCTGCGATCACGTGTTTCACCAACGATGTATTGTGCAATGGCTGCAAACTAGTCATATGTGTCCCTTGTGTCGCTATCCTATGCCCATTGCCAGCAATATATGA 645 0.4326 MQSAQIANTPTDQFKFHIKALFCLYDSNSDDALRSLTTLTHSCQEIACQTFSQEGQDFLWSHLSHPNIPSGVPDAIIPSIMSSVQQLFDNNLAFAIPSDSGYRVFHVQVFIIVDNEEYDDVMQAMMEESAQDFRMIPASKNAIHSLKKVKVTKLDEYCPIFMEEFVVRAGDNGGKAVSAMPCDHVFHQRCIVQWLQTSHMCPLCRYPMPIASNI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1794g00004 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 209 - -
Gabi1794g00004 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 211 IPR013083 -
Gabi1794g00004 214 SUPERFAMILY RING/U-box 149 210 - -
Gabi1794g00004 214 ProSiteProfiles Zinc finger RING-type profile. 158 205 IPR001841 -
Gabi1794g00004 214 SMART ring_2 158 204 IPR001841 -
Gabi1794g00004 214 Pfam RING-H2 zinc finger domain 174 205 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1794g00004 Gabi-Chr1794 37248 37892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1794g00004 116 209 C3H Transcription Factor Family AT1G18760 34.021 1.42e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1794g00004 - - gmx:102665306 115.931