Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi178g00004 ATGGCAGATCCTGCTAGTAATGGGAGTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAGAAAGGAACTCAGTTAATAAAGTACAGCCGGAAAGCAAAGCCAAAAGTTTGCCCATTCAGACTCTCCCTGGATGAAACAACACTGATTTGGATTTCTCGTAAAAAGGAAAGGAATCTGAAATTATCTTCAGTTTCACGTATTATCCCTGGACAAAGAACTGCCGTCTTTAGAAGATATTTGCAACCTGAAAAGGATTATCTTTCATTTTCACTTCTTTATAATAACGGGGAGCGTACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGCCTTAAGACATTAATTTCAACTGGAAAGCTTAATAATAGGCGTACTAGAAGTGAATTACCTGATGTGAGCTTTCATGATGGTGCTGATTTTATTCCAAATGGTCGTCCTTTTGGTGCAGCACTAGAGTTTACTTCAAGCATTGCTCGTGGTAGGTTCTCTACTGATTCAGCTTCTCGTGAGTCAGCAAACCCACATGTTGGGTTAGAGCGTGCAAATATGCAGCCAAGGACAAGTGTTGGAGATGGTTTTCGTGTTAGTGTGTCGAGTACACCTAGCTGTTCAAGTGGAGGATCAGGAACAGATGATATAGAGTCACTAGGTGATGTTTATATATGGGGTGAGGTTTTTGCAGACAGTGGTTCAACTGATGGATTTGGCACTCAGGTCAGTTCCACAACAGACGTGTTGATTCCTAAGCCCTTAGAGTCAAGTATTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGCGCCACATCGCACTAGTTACTAGGCAAGGAGAGGTTTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATGTTGGTCACCCCCAAATAGTTGAGTTTCTAGCAGTTACTAATGTGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCTACATCAGATGATCTTTTCTCATGGGGTGATGGCACATATAATGTTGGACTTCTTGGCCATGGCACTGAAGTTAGCCATTGGATACCAAGGAGGATTAGTGGCCCTCTGGAAGGACTTCAAGTTATATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAAATAGAGAGAGTGTATCATATCCAAAGGAGGTACAATTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTATGTTTCAGTCCGGTTCACATGTTTCATCCAGGAAGCTATTCACTTGGGGAGATGGTGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCCACCTGTGTCTCTGCACTCATTGAATATAACTTCCACCAGATAGCATGTGGACACACTATGACTGTGGCCCTTACTACTTCTGGTCATCTCTTCACTATGGGAGGCACTGAAAATGGTCAACTAGGAAATCCTTCCTCTGATGGAAAAATACCTGGCCTAGTACAAGACAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCAGTCTTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTAGGACAAGGAGACATAGAGGATAGAAAATTTCCAACAGTGGTGGAAGCCTTGAAAGATAGGCATGTAAAAAATATCTCTTGTGGCTCAAACTTTACATCTTGCATATGCATCCATAAATGGGTATCTGGAGTTGACCAATCTGCTTGCACAGGTTGTAGACAACCATTTGGTTTTACTAGAAAAAGGCATAACTGTTATAATTGTGGATTAGTGCATTGCCATGCTTGTAGTTCAAAAAAGGCATTGAAAGCAGCATTGGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGATTCTTGTTATGCTAAGCTTAAAGCTGTTGAGGCAGGTATTACTCCTAATTTGAATAGAAAAGTTACTACCCCACCTCGTGGTTCCTTAGATGGCAGAGAAAGATTTGGCCTGGGAGAAATAAGGTCTTCAAGGATTCTCTTGCCTCCTACCATAGAACCAATAAAATACCTTGAAATAAGGGCTAATAAGCCTGGAAACTTTTATTCTTCCGGGTTCGCACCTTCTCAAGTTCCAACACATTTACAATTGAAAGATATTGCATTTTCAAGTTCAGCAAGTTCCATTCAATATGCTTTGAAGCCTGCCATACCTCCAAGTCCCCCACCAACTCCACCTCTGAACTCAAGACCAGCATCTCCATATGTAAGAAGGCCGAGCCCACCGCGTTCTGGCACTCCTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAGATTTTGAATCAAGAAGTCTCAAAATTGCAGAACCAATTTCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTAAGAAGCTTCAGAAAAATGTTCAGGAAGCTACCTCGTTGGCTGGAGAGGAATCCTCCAAGCATAGAGCAGTTAAAGAATTTATTGAGTCCACAGTAGATCAGTTGAAGGAAATGACTGAGAAGTTACCACCAGAAGATTTGGAAAGTGAAAATTTGAGAACCATGCTAACTCGAGCTGAAGATTTTCTAAAAGAAAATTCAGAATCTGAAACATCTTCTGTACCATCAAACTTGGAGTCCGAGCAACAAAATGAACCGAATACACCAGCCTCAAATAGTGACTCTTCCAAACTGCAAGAACACAGAATAGAAGAAGATAATGAAGCTGAAGGAGATAACCAATCTCAAGACGGAGGAAATGTCCTTCAAGAAAGTAATAGTTCATCTTTATCCAGTACCGAAGCAACAGTGCCTCCACAAAGCTCTGAAAATCACCCAAAATCACTGGACTCTTCAAGATCAGGGAGAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTTACTCTAATAGTAAAGCATGGTGGTATCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCCATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAAAGAAAGGGTGCTTAGGAAATATAGTCTGCCTGCTACTACAAGTCAAGAAGGTACTGAGTCATCTAGCACCCCACCACCTGCTGAGCAAAATATTGAGGCAGCACCTTCCGAAACTTGA 3258 0.4131 MADPASNGSLERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISRKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLLYNNGERTLDLICKDKAEAEVWFAGLKTLISTGKLNNRRTRSELPDVSFHDGADFIPNGRPFGAALEFTSSIARGRFSTDSASRESANPHVGLERANMQPRTSVGDGFRVSVSSTPSCSSGGSGTDDIESLGDVYIWGEVFADSGSTDGFGTQVSSTTDVLIPKPLESSIVLDVQQIASGVRHIALVTRQGEVFTWGEESGGRLGHGIDKDVGHPQIVEFLAVTNVDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTEVSHWIPRRISGPLEGLQVISVACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSHVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHLFTMGGTENGQLGNPSSDGKIPGLVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGKGANGRLGQGDIEDRKFPTVVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDSCYAKLKAVEAGITPNLNRKVTTPPRGSLDGRERFGLGEIRSSRILLPPTIEPIKYLEIRANKPGNFYSSGFAPSQVPTHLQLKDIAFSSSASSIQYALKPAIPPSPPPTPPLNSRPASPYVRRPSPPRSGTPGFSRSLIDSLRKTNEILNQEVSKLQNQFRSLKQKSDMEIKKLQKNVQEATSLAGEESSKHRAVKEFIESTVDQLKEMTEKLPPEDLESENLRTMLTRAEDFLKENSESETSSVPSNLESEQQNEPNTPASNSDSSKLQEHRIEEDNEAEGDNQSQDGGNVLQESNSSSLSSTEATVPPQSSENHPKSLDSSRSGREGETQVIEQFEPGVYVTLIVKHGGIKVFKRVRFSKRRFHEHQAEEWWNKNKERVLRKYSLPATTSQEGTESSSTPPPAEQNIEAAPSET 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi178g00004 1085 SMART fyve_4 607 676 IPR000306 GO:0046872
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 769 795 - -
Gabi178g00004 1085 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi178g00004 1085 SUPERFAMILY PH domain-like 13 123 - -
Gabi178g00004 1085 SUPERFAMILY RCC1/BLIP-II 224 610 IPR009091 -
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 767 806 - -
Gabi178g00004 1085 FunFam PH, RCC1 and FYVE domains-containing protein 1 196 444 - -
Gabi178g00004 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 270 280 IPR000408 -
Gabi178g00004 1085 ProSiteProfiles BRX domain profile. 1000 1055 IPR013591 -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 453 504 IPR000408 -
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 1055 1085 - -
Gabi178g00004 1085 Coils Coil 808 853 - -
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 904 999 - -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 953 988 - -
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 1054 1085 - -
Gabi178g00004 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 680 IPR013083 -
Gabi178g00004 1085 Gene3D - 12 132 IPR011993 -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 283 IPR000408 -
Gabi178g00004 1085 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 874 - -
Gabi178g00004 1085 SUPERFAMILY FYVE/PHD zinc finger 609 677 IPR011011 -
Gabi178g00004 1085 Gene3D - 347 447 IPR009091 -
Gabi178g00004 1085 Gene3D - 187 346 IPR009091 -
Gabi178g00004 1085 CDD FYVE_like_SF 618 671 - -
Gabi178g00004 1085 CDD PH_PLC_plant-like 12 124 - -
Gabi178g00004 1085 MobiDBLite consensus disorder prediction 908 936 - -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Gabi178g00004 1085 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 613 675 IPR017455 -
Gabi178g00004 1085 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Gabi178g00004 1085 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Gabi178g00004 1085 PRINTS Chromosome condensation regulator RCC1 signature 494 512 IPR000408 -
Gabi178g00004 1085 PRINTS Chromosome condensation regulator RCC1 signature 552 573 IPR000408 -
Gabi178g00004 1085 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Gabi178g00004 1085 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Gabi178g00004 1085 Pfam FYVE zinc finger 609 675 IPR000306 GO:0046872
Gabi178g00004 1085 Pfam Transcription factor regulating root and shoot growth via Pin3 1000 1054 IPR013591 -
Gabi178g00004 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Gabi178g00004 1085 Pfam Transcription factor BRX N-terminal domain 856 889 IPR027988 -
Gabi178g00004 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 455 501 IPR000408 -
Gabi178g00004 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 558 605 IPR000408 -
Gabi178g00004 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Gabi178g00004 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 337 386 IPR000408 -
Gabi178g00004 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 504 553 IPR000408 -
Gabi178g00004 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Gabi178g00004 1085 Gene3D - 448 621 IPR009091 -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 557 608 IPR000408 -
Gabi178g00004 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 505 556 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi178g00004 Gabi-Chr178 13016 20498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi178g00004 997 1056 Major Intrinsic Protein MIP AT1G31880 33.333 8.11e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi178g00004 - - gmx:100779684 1610.51