Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi178g00003 ATGGCAGATCCTGCTAGTAATGGGAGTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAGAAAGGAACTCAGTTAATAAAGTACAGCCGGAAAGCAAAGCCAAAAGTTTGCCCATTCAGACTCTCCCTGGATGAAACAACACTGATTTGGATTTCTCGTAAAAAGGAAAGGAATCTGAAATTATCTTCAGTTTCACGTATTATCCCTGGACAAAGAACTGCCGTCTTTAGAAGATATTTGCAACCTGAAAAGGATTATCTTTCATTTTCACTTCTTTATAATAACGGGGAGCGTACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGCCTTAAGACATTAATTTCAACTGGAAAGCTTAATAATAGGCGTACTAGAAGTGAATTACCTGATTTTCAGGATGGTGCTGATTTTATTCCAAATGGTCGTCCTTTTGGTGCAGCACTAGAGTTTACTTCAAGCATTGCTCGTGGTAGGTTCTCTACTGATTCAGCTTCTCGTGAGTCAGCAAACCCACATGTTGGGTTAGAGCGTGCAAATATGCAGCCAAGGACAAGTGTTGGAGATGGTTTTCGTGTTAGTGTGTCGAGTACACCTAGCTGTTCAAGTGGAGGATCAGGAACAGATGATATAGAGTCACTAGGTGATGTTTATATATGGGGTGAGGTTTTTGCAGACAGTGGTTCAACTGATGGATTTGGCACTCAGGTCAGTTCCACAACAGACGTGTTGATTCCTAAGCCCTTAGAGTCAAGTATTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGCGCCACATCGCACTAGTTACTAGGCAAGGAGAGGTTTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATGTTGGTCACCCCCAAATAGTTGAGTTTCTAGCAGTTACTAATGTGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCTACATCAGATGATCTTTTCTCATGGGGTGATGGCACATATAATGTTGGACTTCTTGGCCATGGCACTGAAGTTAGCCATTGGATACCAAGGAGGATTAGTGGCCCTCTGGAAGGACTTCAAGTTATATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAAATAGAGAGAGTGTATCATATCCAAAGGAGGTACAATTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTATGTTTCAGTCCGGTTCACATGTTTCATCCAGGAAGCTATTCACTTGGGGAGATGGTGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCCACCTGTGTCTCTGCACTCATTGAATATAACTTCCACCAGATAGCATGTGGACACACTATGACTGTGGCCCTTACTACTTCTGGTCATCTCTTCACTATGGGAGGCACTGAAAATGGTCAACTAGGAAATCCTTCCTCTGATGGAAAAATACCTGGCCTAGTACAAGACAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCAGTCTTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTAGGACAAGGAGACATAGAGGATAGAAAATTTCCAACAGTGGTGGAAGCCTTGAAAGATAGGCATGTAAAAAATATCTCTTGTGGCTCAAACTTTACATCTTGCATATGCATCCATAAATGGGTATCTGGAGTTGACCAATCTGCTTGCACAGGTTGTAGACAACCATTTGGTTTTACTAGAAAAAGGCATAACTGTTATAATTGTGGATTAGTGCATTGCCATGCTTGTAGTTCAAAAAAGGCATTGAAAGCAGCATTGGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGATTCTTGTTATGCTAAGCTTAAAGCTGTTGAGGCAGGTATTACTCCTAATTTGAATAGAAAAGTTACTACCCCACCTCGTGGTTCCTTAGATGGCAGAGAAAGATTTGGCCTGGGAGAAATAAGGTCTTCAAGGATTCTCTTGCCTCCTACCATAGAACCAATAAAATACCTTGAAATAAGGGCTAATAAGCCTGGAAACTTTTATTCTTCCGGGTTCGCACCTTCTCAAGTTCCAACACATTTACAATTGAAAGATATTGCATTTTCAAGTTCAGCAAGTTCCATTCAATATGCTTTGAAGCCTGCCATACCTCCAAGTCCCCCACCAACTCCACCTCTGAACTCAAGACCAGCATCTCCATATGTAAGAAGGCCGAGCCCACCGCGTTCTGGCACTCCTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAGATTTTGAATCAAGAAGTCTCAAAATTGCAGAACCAATTTCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTAAGAAGCTTCAGAAAAATGTTCAGGAAGCTACCTCGTTGGCTGGAGAGGAATCCTCCAAGCATAGAGCAGTTAAAGAATTTATTGAGTCCACAGTAGATCAGTTGAAGGAAATGACTGAGAAGTTACCACCAGAAGATTTGGAAAGTGAAAATTTGAGAACCATGCTAACTCGAGCTGAAGATTTTCTAAAAGAAAATTCAGAATCTGAAACATCTTCTGTACCATCAAACTTGGAGTCCGAGCAACAAAATGAACCGAATACACCAGCCTCAAATAGTGACTCTTCCAAACTGCAAGAACACAGAATAGAAGAAGATAATGAAGCTGAAGGAGATAACCAATCTCAAGACGGAGGAAATGTCCTTCAAGAAAGTAATAGTTCATCTTTATCCAGTACCGAAGCAACAGTGCCTCCACAAAGCTCTGAAAATCACCCAAAATCACTGGACTCTTCAAGATCAGGGAGAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTTACTCTAATAGTAAAGCATGGTGGTATCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCCATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAAAGAAAGGGTGCTTAGGAAATATAGTCTGCCTGCTACTACAAGTCAAGAAGGTACTGAGTCATCTAGCACCCCACCACCTGCTGAGCAAAATATTGAGGCAGCACCTTCCGAAACTTGA 3252 0.413 MADPASNGSLERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISRKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLLYNNGERTLDLICKDKAEAEVWFAGLKTLISTGKLNNRRTRSELPDFQDGADFIPNGRPFGAALEFTSSIARGRFSTDSASRESANPHVGLERANMQPRTSVGDGFRVSVSSTPSCSSGGSGTDDIESLGDVYIWGEVFADSGSTDGFGTQVSSTTDVLIPKPLESSIVLDVQQIASGVRHIALVTRQGEVFTWGEESGGRLGHGIDKDVGHPQIVEFLAVTNVDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTEVSHWIPRRISGPLEGLQVISVACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSHVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHLFTMGGTENGQLGNPSSDGKIPGLVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGKGANGRLGQGDIEDRKFPTVVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDSCYAKLKAVEAGITPNLNRKVTTPPRGSLDGRERFGLGEIRSSRILLPPTIEPIKYLEIRANKPGNFYSSGFAPSQVPTHLQLKDIAFSSSASSIQYALKPAIPPSPPPTPPLNSRPASPYVRRPSPPRSGTPGFSRSLIDSLRKTNEILNQEVSKLQNQFRSLKQKSDMEIKKLQKNVQEATSLAGEESSKHRAVKEFIESTVDQLKEMTEKLPPEDLESENLRTMLTRAEDFLKENSESETSSVPSNLESEQQNEPNTPASNSDSSKLQEHRIEEDNEAEGDNQSQDGGNVLQESNSSSLSSTEATVPPQSSENHPKSLDSSRSGREGETQVIEQFEPGVYVTLIVKHGGIKVFKRVRFSKRRFHEHQAEEWWNKNKERVLRKYSLPATTSQEGTESSSTPPPAEQNIEAAPSET 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi178g00003 1083 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi178g00003 1083 SUPERFAMILY PH domain-like 13 123 - -
Gabi178g00003 1083 Coils Coil 806 851 - -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 389 440 IPR000408 -
Gabi178g00003 1083 SMART fyve_4 605 674 IPR000306 GO:0046872
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 902 997 - -
Gabi178g00003 1083 SUPERFAMILY FYVE/PHD zinc finger 607 675 IPR011011 -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 334 388 IPR000408 -
Gabi178g00003 1083 Gene3D - 12 132 IPR011993 -
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 951 986 - -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 333 IPR000408 -
Gabi178g00003 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 427 437 IPR000408 -
Gabi178g00003 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 282 330 IPR000408 -
Gabi178g00003 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 453 499 IPR000408 -
Gabi178g00003 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 388 437 IPR000408 -
Gabi178g00003 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 556 603 IPR000408 -
Gabi178g00003 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 335 384 IPR000408 -
Gabi178g00003 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 223 281 IPR000408 -
Gabi178g00003 1083 CDD FYVE_like_SF 616 669 - -
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 906 934 - -
Gabi178g00003 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 678 IPR013083 -
Gabi178g00003 1083 PRINTS Chromosome condensation regulator RCC1 signature 492 510 IPR000408 -
Gabi178g00003 1083 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Gabi178g00003 1083 PRINTS Chromosome condensation regulator RCC1 signature 391 405 IPR000408 -
Gabi178g00003 1083 PRINTS Chromosome condensation regulator RCC1 signature 550 571 IPR000408 -
Gabi178g00003 1083 PRINTS Chromosome condensation regulator RCC1 signature 284 300 IPR000408 -
Gabi178g00003 1083 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 451 502 IPR000408 -
Gabi178g00003 1083 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 867 - -
Gabi178g00003 1083 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 1053 1083 - -
Gabi178g00003 1083 Gene3D - 181 445 IPR009091 -
Gabi178g00003 1083 Gene3D - 446 619 IPR009091 -
Gabi178g00003 1083 Pfam FYVE zinc finger 607 673 IPR000306 GO:0046872
Gabi178g00003 1083 SUPERFAMILY RCC1/BLIP-II 222 608 IPR009091 -
Gabi178g00003 1083 Pfam Transcription factor BRX N-terminal domain 854 887 IPR027988 -
Gabi178g00003 1083 CDD PH_PLC_plant-like 12 124 - -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Gabi178g00003 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 1052 1083 - -
Gabi178g00003 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 268 278 IPR000408 -
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 767 793 - -
Gabi178g00003 1083 MobiDBLite consensus disorder prediction 765 804 - -
Gabi178g00003 1083 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 611 673 IPR017455 -
Gabi178g00003 1083 FunFam PH, RCC1 and FYVE domains-containing protein 1 194 442 - -
Gabi178g00003 1083 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1052 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi178g00003 Gabi-Chr178 12793 20498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi178g00003 995 1054 Major Intrinsic Protein MIP AT1G31880 33.333 8.16e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi178g00003 - - gmx:100779684 1610.89