Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi178g00001 ATGGCAGATCCTGCTAGTAATGGGAGTCTTGAGCGTGATATTGAGCAAGCACTCATTGCTTTAAAGAAAGGAACTCAGTTAATAAAGTACAGCCGGAAAGCAAAGCCAAAAGTTTGCCCATTCAGACTCTCCCTGGATGAAACAACACTGATTTGGATTTCTCGTAAAAAGGAAAGGAATCTGAAATTATCTTCAGTTTCACGTATTATCCCTGGACAAAGAACTGCCGTCTTTAGAAGATATTTGCAACCTGAAAAGGATTATCTTTCATTTTCACTTCTTTATAATAACGGGGAGCGTACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGCCTTAAGACATTAATTTCAACTGGAAAGCTTAATAATAGGCGTACTAGAAGTGAATTACCTGATGTGAATGATAGTGAAACATTTCAGGATGGTGCTGATTTTATTCCAAATGGTCGTCCTTTTGGTGCAGCACTAGAGTTTACTTCAAGCATTGCTCGTGGTAGGTTCTCTACTGATTCAGCTTCTCGTGAGTCAGCAAACCCACATGTTGGGTTAGAGCGTGCAAATATGCAGCCAAGGACAAGTGTTGGAGATGGTTTTCGTGTTAGTGTGTCGAGTACACCTAGCTGTTCAAGTGGAGGATCAGGAACAGATGATATAGAGTCACTAGGTGATGTTTATATATGGGGTGAGGTTTTTGCAGACAGTGGTTCAACTGATGGATTTGGCACTCAGGTCAGTTCCACAACAGACGTGTTGATTCCTAAGCCCTTAGAGTCAAGTATTGTTCTTGATGTTCAACAGATTGCATCTGGTGTGCGCCACATCGCACTAGTTACTAGGCAAGGAGAGGTTTTTACTTGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAAAGATGTTGGTCACCCCCAAATAGTTGAGTTTCTAGCAGTTACTAATGTGGATTTTGTTGCATGTGGAGAGAATCATACATGTGCTGTATCTACATCAGATGATCTTTTCTCATGGGGTGATGGCACATATAATGTTGGACTTCTTGGCCATGGCACTGAAGTTAGCCATTGGATACCAAGGAGGATTAGTGGCCCTCTGGAAGGACTTCAAGTTATATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTTACCTTTGGTGATGGAACATTTGGTGTCTTGGGTCATGGAAATAGAGAGAGTGTATCATATCCAAAGGAGGTACAATTATTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTATGTTTCAGTCCGGTTCACATGTTTCATCCAGGAAGCTATTCACTTGGGGAGATGGTGACAAATATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCCACCTGTGTCTCTGCACTCATTGAATATAACTTCCACCAGATAGCATGTGGACACACTATGACTGTGGCCCTTACTACTTCTGGTCATCTCTTCACTATGGGAGGCACTGAAAATGGTCAACTAGGAAATCCTTCCTCTGATGGAAAAATACCTGGCCTAGTACAAGACAAGTTGGTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATGTTGCAGTCTTGACATCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTAGGACAAGGAGACATAGAGGATAGAAAATTTCCAACAGTGGTGGAAGCCTTGAAAGATAGGCATGTAAAAAATATCTCTTGTGGCTCAAACTTTACATCTTGCATATGCATCCATAAATGGGTATCTGGAGTTGACCAATCTGCTTGCACAGGTTGTAGACAACCATTTGGTTTTACTAGAAAAAGGCATAACTGTTATAATTGTGGATTAGTGCATTGCCATGCTTGTAGTTCAAAAAAGGCATTGAAAGCAGCATTGGCTCCAACACCAGGAAAACCTCATCGTGTGTGTGATTCTTGTTATGCTAAGCTTAAAGCTGTTGAGGCAGGTATTACTCCTAATTTGAATAGAAAAGTTACTACCCCACCTCGTGGTTCCTTAGATGGCAGAGAAAGATTTGGCCTGGGAGAAATAAGGTCTTCAAGGATTCTCTTGCCTCCTACCATAGAACCAATAAAATACCTTGAAATAAGGGCTAATAAGCCTGGAAACTTTTATTCTTCCGGGTTCGCACCTTCTCAAGTTCCAACACATTTACAATTGAAAGATATTGCATTTTCAAGTTCAGCAAGTTCCATTCAATATGCTTTGAAGCCTGCCATACCTCCAAGTCCCCCACCAACTCCACCTCTGAACTCAAGACCAGCATCTCCATATGTAAGAAGGCCGAGCCCACCGCGTTCTGGCACTCCTGGATTTTCTAGAAGTCTTATTGATAGTTTGAGGAAGACAAATGAGATTTTGAATCAAGAAGTCTCAAAATTGCAGAACCAATTTCGAAGTTTGAAGCAGAAAAGTGACATGGAAATTAAGAAGCTTCAGAAAAATGTTCAGGAAGCTACCTCGTTGGCTGGAGAGGAATCCTCCAAGCATAGAGCAGTTAAAGAATTTATTGAGTCCACAGTAGATCAGTTGAAGGAAATGACTGAGAAGTTACCACCAGAAGATTTGGAAAGTGAAAATTTGAGAACCATGCTAACTCGAGCTGAAGATTTTCTAAAAGAAAATTCAGAATCTGAAACATCTTCTGTACCATCAAACTTGGAGTCCGAGCAACAAAATGAACCGAATACACCAGCCTCAAATAGAAATGTCCTTCAAGAAAGTAATAGTTCATCTTTATCCAGTACCGAAGCAACAGTGCCTCCACAAAGCTCTGAAAATCACCCAAAATCACTGGACTCTTCAAGATCAGGGAGAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGTGTTTATGTTACTCTAATAGTAAAGCATGGTGGTATCAAAGTTTTCAAACGAGTTAGATTCAGTAAGCGAAGGTTCCATGAGCATCAGGCAGAAGAATGGTGGAACAAAAACAAAGAAAGGGTGCTTAGGAAATATAGTCTGCCTGCTACTACAAGTCAAGAAGGTACTGAGTCATCTAGCACCCCACCACCTGCTGAGCAAAATATTGAGGCAGCACCTTCCGAAACTTGA 3192 0.4126 MADPASNGSLERDIEQALIALKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISRKKERNLKLSSVSRIIPGQRTAVFRRYLQPEKDYLSFSLLYNNGERTLDLICKDKAEAEVWFAGLKTLISTGKLNNRRTRSELPDVNDSETFQDGADFIPNGRPFGAALEFTSSIARGRFSTDSASRESANPHVGLERANMQPRTSVGDGFRVSVSSTPSCSSGGSGTDDIESLGDVYIWGEVFADSGSTDGFGTQVSSTTDVLIPKPLESSIVLDVQQIASGVRHIALVTRQGEVFTWGEESGGRLGHGIDKDVGHPQIVEFLAVTNVDFVACGENHTCAVSTSDDLFSWGDGTYNVGLLGHGTEVSHWIPRRISGPLEGLQVISVACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSHVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHLFTMGGTENGQLGNPSSDGKIPGLVQDKLVGEFVEEISCGAHHVAVLTSRSELYTWGKGANGRLGQGDIEDRKFPTVVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHACSSKKALKAALAPTPGKPHRVCDSCYAKLKAVEAGITPNLNRKVTTPPRGSLDGRERFGLGEIRSSRILLPPTIEPIKYLEIRANKPGNFYSSGFAPSQVPTHLQLKDIAFSSSASSIQYALKPAIPPSPPPTPPLNSRPASPYVRRPSPPRSGTPGFSRSLIDSLRKTNEILNQEVSKLQNQFRSLKQKSDMEIKKLQKNVQEATSLAGEESSKHRAVKEFIESTVDQLKEMTEKLPPEDLESENLRTMLTRAEDFLKENSESETSSVPSNLESEQQNEPNTPASNRNVLQESNSSSLSSTEATVPPQSSENHPKSLDSSRSGREGETQVIEQFEPGVYVTLIVKHGGIKVFKRVRFSKRRFHEHQAEEWWNKNKERVLRKYSLPATTSQEGTESSSTPPPAEQNIEAAPSET 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi178g00001 1063 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Gabi178g00001 1063 PRINTS Chromosome condensation regulator RCC1 signature 556 577 IPR000408 -
Gabi178g00001 1063 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Gabi178g00001 1063 PRINTS Chromosome condensation regulator RCC1 signature 290 306 IPR000408 -
Gabi178g00001 1063 PRINTS Chromosome condensation regulator RCC1 signature 397 411 IPR000408 -
Gabi178g00001 1063 PRINTS Chromosome condensation regulator RCC1 signature 498 516 IPR000408 -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 288 339 IPR000408 -
Gabi178g00001 1063 MobiDBLite consensus disorder prediction 1033 1063 - -
Gabi178g00001 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 274 284 IPR000408 -
Gabi178g00001 1063 SUPERFAMILY PH domain-like 13 123 - -
Gabi178g00001 1063 Gene3D - 453 625 IPR009091 -
Gabi178g00001 1063 Gene3D - 187 452 IPR009091 -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 395 446 IPR000408 -
Gabi178g00001 1063 MobiDBLite consensus disorder prediction 908 977 - -
Gabi178g00001 1063 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 617 679 IPR017455 -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 229 287 IPR000408 -
Gabi178g00001 1063 MobiDBLite consensus disorder prediction 1032 1063 - -
Gabi178g00001 1063 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Gabi178g00001 1063 CDD FYVE_like_SF 622 675 - -
Gabi178g00001 1063 MobiDBLite consensus disorder prediction 773 799 - -
Gabi178g00001 1063 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 878 - -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Gabi178g00001 1063 MobiDBLite consensus disorder prediction 771 810 - -
Gabi178g00001 1063 Pfam FYVE zinc finger 613 679 IPR000306 GO:0046872
Gabi178g00001 1063 CDD PH_PLC_plant-like 12 124 - -
Gabi178g00001 1063 ProSiteProfiles BRX domain profile. 978 1033 IPR013591 -
Gabi178g00001 1063 SUPERFAMILY FYVE/PHD zinc finger 613 681 IPR011011 -
Gabi178g00001 1063 Pfam Transcription factor regulating root and shoot growth via Pin3 978 1032 IPR013591 -
Gabi178g00001 1063 FunFam PH, RCC1 and FYVE domains-containing protein 1 200 448 - -
Gabi178g00001 1063 Gene3D - 12 132 IPR011993 -
Gabi178g00001 1063 Coils Coil 812 857 - -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 394 IPR000408 -
Gabi178g00001 1063 SMART fyve_4 611 680 IPR000306 GO:0046872
Gabi178g00001 1063 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 684 IPR013083 -
Gabi178g00001 1063 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 433 443 IPR000408 -
Gabi178g00001 1063 Pfam Transcription factor BRX N-terminal domain 860 893 IPR027988 -
Gabi178g00001 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 562 609 IPR000408 -
Gabi178g00001 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 459 505 IPR000408 -
Gabi178g00001 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 341 390 IPR000408 -
Gabi178g00001 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 394 443 IPR000408 -
Gabi178g00001 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 508 557 IPR000408 -
Gabi178g00001 1063 Pfam Regulator of chromosome condensation (RCC1) repeat 288 336 IPR000408 -
Gabi178g00001 1063 SUPERFAMILY RCC1/BLIP-II 228 614 IPR009091 -
Gabi178g00001 1063 MobiDBLite consensus disorder prediction 912 966 - -
Gabi178g00001 1063 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 457 508 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi178g00001 Gabi-Chr178 12793 20498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi178g00001 975 1034 Major Intrinsic Protein MIP AT1G31880 33.333 8.20e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi178g00001 - - gmx:100779684 1565.82