Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1789g00016 ATGAACATGGATGTGTGCCAAAATGTATCAGTTTCCGGCGAGTGCAAGCAAGAGAAGGTCCTTACCCCTTCTTGCTCAAAGCTTTCTACCTTCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGGCTTGGAATGGCTTTCAGTATTTGTTGAAGACTGTTTTTCCAGCCCCCCAAGTTGTGTCTTGGTACCTAATGGTGTTAAGACTACAAGCACAAGCACAAGCTCCAAACCTTCAGGCACATTGCAGAGAACCCGGAAAAATGAGTCACCTTTGCAAAATTTTGCTGTGCCTGGGAAGGCTAGAAGCAAAAGGAAAAGGCTTTCAGCTCCTAGAACAAAAGACCCTTTAAGCATATGGTCACGCCATTTAAACCCACAAAATGAAGCCTTGAGTTCTGACCCTCCTCTTCTCAAACAGGCTTATTGGTTGGCTGATAGTGAACTCATTGTTACTAAACAGAAGGAAGAGAGTGAGGGGATCAAAGAAGAAGAAGAAGTGGTGGAGAAGGGGATTGTGAGCAAGGAAAGCTTTGTGGACTCTGAGAGTGAAGTTAGCAATGGTCAACATCCAATGCCAAGGAGGTGCACACATTGCCTTGCACAGAGGACCCCACAGTGGAGGGCAGGACCCTTGGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTACTACCTGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTGAGCTACTTGCACTCCAATTCCCACAAGAAAGTTATGGAGATGAGGATGGCTGTTCCTTCTTCCATTCCTAGTGAGCAGTAG 831 0.4657 MNMDVCQNVSVSGECKQEKVLTPSCSKLSTFSSSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSPPSCVLVPNGVKTTSTSTSSKPSGTLQRTRKNESPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSRHLNPQNEALSSDPPLLKQAYWLADSELIVTKQKEESEGIKEEEEVVEKGIVSKESFVDSESEVSNGQHPMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVPSSIPSEQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1789g00016 276 SMART GATA_3 197 251 IPR000679 GO:0006355|GO:0043565
Gabi1789g00016 276 ProSitePatterns GATA-type zinc finger domain. 203 228 IPR000679 GO:0006355|GO:0043565
Gabi1789g00016 276 MobiDBLite consensus disorder prediction 73 120 - -
Gabi1789g00016 276 PANTHER GATA TRANSCRIPTION FACTOR 27 269 - -
Gabi1789g00016 276 MobiDBLite consensus disorder prediction 73 99 - -
Gabi1789g00016 276 Pfam GATA zinc finger 203 237 IPR000679 GO:0006355|GO:0043565
Gabi1789g00016 276 CDD ZnF_GATA 202 249 IPR000679 GO:0006355|GO:0043565
Gabi1789g00016 276 ProSiteProfiles GATA-type zinc finger domain profile. 197 233 IPR000679 GO:0006355|GO:0043565
Gabi1789g00016 276 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 261 - -
Gabi1789g00016 276 FunFam GATA transcription factor 193 274 - -
Gabi1789g00016 276 Gene3D - 192 264 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1789g00016 Gabi-Chr1789 212082 213338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1789g00016 26 265 C2C2-Gata Transcription Factor Family AT4G32890 40.964 1.64e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi1789g00016 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1789g00016 - - gmx:100786479 397.897