Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1789g00006 ATGGGGGAGAAAGAATGGTACTTCTTCTGTCAAAAGGATAGGAAGTATCCAACGGGTATGAGAACCAATAGAGCTACAGAATCAGGGTATTGGAAGGCCACAGGAAAAGATAAGGAAATTTACAAAGGGAAAGGTAACCTTGTTGGTATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAGAAAACCAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAAGTTACAATCTCCCTAAGGCTGCTAAGGATGAATGGGTTGTCTCCAGGGTTTTTCACAAGGTCACAGATGTTAAGAGGACCCCAATTCCTGGCCTAATGAGGATGAACTCTATTGGGGATGATCTTCTAGATTATTCTTCACTCCCACCTCTCATGGATCCTACTTATAGCAACATCACCAACAAGCCTGCAAGCTATAGTGGTGATGATGATTTCAAGGGAATAAACTCACTATCATCAACTAAATCAACATCAGATGGTTATTATCTTCCCAGCTTCTCCATCAACAATCAACACCAACTACTAATCAAGCCAGAAGACCACAGAACCTATGAGCTTCCTACCATCAACTACACTTCCAACCAATCCAATCTCATCCAAAATCCAAGCTCATCCTTTCAGCAAAACATGAATATCTCTGATTACTTTGTGCACCAAAACAAGATGCAAAGTTCCATGCCAAGTGTCACAGGTTTTGGGAGCAACAATCATGACCAAGCTATCCTAAGAGCATTTGCAGCCAAGAATGAGTTCATATCAGACTTGGACAAACAGTGCAAGATGGAGCAGTTCTCATCCAACCATTCACAAGAAACAGGCCTTAGCAACGACAGAAACACCGACACATCCTCGGTGATTTCAAAGCAAGACATGGGAAGAAATAGGGCATTGTACGATGATCTTGAAGGTCCATCTTCAGTTGCACCTCTTTCAGATTTGGAATGCCTCTGGGATAACTACTGA 987 0.4245 MGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKVTDVKRTPIPGLMRMNSIGDDLLDYSSLPPLMDPTYSNITNKPASYSGDDDFKGINSLSSTKSTSDGYYLPSFSINNQHQLLIKPEDHRTYELPTINYTSNQSNLIQNPSSSFQQNMNISDYFVHQNKMQSSMPSVTGFGSNNHDQAILRAFAAKNEFISDLDKQCKMEQFSSNHSQETGLSNDRNTDTSSVISKQDMGRNRALYDDLEGPSSVAPLSDLECLWDNY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1789g00006 328 ProSiteProfiles NAC domain profile. 1 101 IPR003441 GO:0003677|GO:0006355
Gabi1789g00006 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 264 - -
Gabi1789g00006 328 MobiDBLite consensus disorder prediction 271 296 - -
Gabi1789g00006 328 SUPERFAMILY NAC domain 2 101 IPR036093 GO:0003677|GO:0006355
Gabi1789g00006 328 Gene3D NAC domain 1 105 IPR036093 GO:0003677|GO:0006355
Gabi1789g00006 328 Pfam No apical meristem (NAM) protein 2 76 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1789g00006 Gabi-Chr1789 102295 104081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1789g00006 1 326 NAC Transcription Factor Family AT5G18270 44.675 2.75e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1789g00006 NAM 8.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1789g00006 - - aprc:113861501 526.168