Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1789g00005 ATGGTGTCCTTTATGGAAGAACCGGTTGTGGTGAACAAAGGTGAAGAGCCTCTTGATTTGCCTCCAGGTTTCAGGTTCCACCCCACTGATGAAGAGATCATCACTTATTATCTGACTGAGAAGGTGAAGAATAGTTGTTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAATAGGTGTGAACCTTGGGATTTACCAAAGAAAGCCAAGATGGGGGAGAAAGAATGGTACTTCTTCTGTCAAAAGGATAGGAAGTATCCAACGGGTATGAGAACCAATAGAGCTACAGAATCAGGGTATTGGAAGGCCACAGGAAAAGATAAGGAAATTTACAAAGGGAAAGGTAACCTTGTTGGTATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGGGAGAAAACCAATTGGGTCATGCATGAATTCAGATTGGAAGGCAAATTTGCAAGTTACAATCTCCCTAAGGCTGCTAAGGATGAATGGGTTGTCTCCAGGGTTTTTCACAAGGTCACAGATGTTAAGAGGACCCCAATTCCTGGCCTAATGAGGATGAACTCTATTGGGGATGATCTTCTAGATTATTCTTCACTCCCACCTCTCATGGATCCTACTTATAGCAACATCACCAACAAGCCTGCAAGCTATAGTGGTGATGATGATTTCAAGGGAATAAACTCACTATCATCAACTAAATCAACATCAGATGGTTATTATCTTCCCAGCTTCTCCATCAACAATCAACACCAACTACTAATCAAGCCAGAAGACCACAGAACCTATGAGCTTCCTACCATCAACTACACTTCCAACCAATCCAATCTCATCCAAAATCCAAGCTCATCCTTTCAGCAAAACATGAATATCTCTGATTACTTTGTGCACCAAAACAAGATGCAAAGTTCCATGCCAAGTGTCACAGGTTTTGGGAGCAACAATCATGACCAAGCTATCCTAAGAGCATTTGCAGCCAAGAATGAGTTCATATCAGACTTGGACAAACAGTGCAAGATGGAGCAGTTCTCATCCAACCATTCACAAGAAACAGGCCTTAGCAACGACAGAAACACCGACACATCCTCGGTGATTTCAAAGCAAGACATGGGAAGAAATAGGGCATTGTACGATGATCTTGAAGGTCCATCTTCAGTTGCACCTCTTTCAGATTTGGAATGCCTCTGGGATAACTACTGA 1197 0.4261 MVSFMEEPVVVNKGEEPLDLPPGFRFHPTDEEIITYYLTEKVKNSCFSATAIGEADLNRCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKVTDVKRTPIPGLMRMNSIGDDLLDYSSLPPLMDPTYSNITNKPASYSGDDDFKGINSLSSTKSTSDGYYLPSFSINNQHQLLIKPEDHRTYELPTINYTSNQSNLIQNPSSSFQQNMNISDYFVHQNKMQSSMPSVTGFGSNNHDQAILRAFAAKNEFISDLDKQCKMEQFSSNHSQETGLSNDRNTDTSSVISKQDMGRNRALYDDLEGPSSVAPLSDLECLWDNY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1789g00005 398 SUPERFAMILY NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Gabi1789g00005 398 ProSiteProfiles NAC domain profile. 20 171 IPR003441 GO:0003677|GO:0006355
Gabi1789g00005 398 Pfam No apical meristem (NAM) protein 21 146 IPR003441 GO:0003677|GO:0006355
Gabi1789g00005 398 MobiDBLite consensus disorder prediction 341 366 - -
Gabi1789g00005 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 299 - -
Gabi1789g00005 398 FunFam NAC domain-containing protein 100-like 29 175 - -
Gabi1789g00005 398 Gene3D NAC domain 29 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1789g00005 Gabi-Chr1789 102106 104081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1789g00005 1 396 NAC Transcription Factor Family AT5G18270 49.633 1.22e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1789g00005 NAM 6.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1789g00005 - - aprc:113861501 659.833