Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1789g00003 ATGGGAACCCCAGAATCCAATTTGCCACCAGGTTTTAGGTTCCACCCAACTGATGCGGAGCTCATTCTTCACTATCTAAGGAAGAAATTAGCCTCCATACCCTTACCCGTTTCCATCATTGCTGAGGTTGATATCTACAAATTGGATCCATGGGATTTGCCAGCTAAGGCTACCTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCTAGAGACCGCAAGTACCCAAATGGTGCTAGGCCAAACAGAGCAGCTGCTTCAGGGTATTGGAAAGCCACTGGCACAGATAAGACCATAGTGGCATCATTGCCAGGTGGAGGAGGAGGAGGAAGCCAAGAGAACATTGGTGTTAAGAAGGCTTTGGTTTTCTACAAAGGAAGACCCCCAAAGGGTGTTAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAATAATAAACCCATTAAGCTCAAAGACTCCTCCATGAGGTTAGATGATTGGGTACTGTGCCGGATTTACAAAAAGTCCAAATATTCTCTACCTTCAACAGAGGCAACAACAGTGGTAGATGAGATAGATCAAGCAGAAGAGCATCTATTCAAGGACACCCTTTTACCAATCACAAAAAGTCCAACCCCACCACCTCAGAACACACTGATATCTCAGAAATCTGTGTCCTTCTCCAACCTGTTGGATGCCATGGACTACTCCATGCTTAGCAGCTTCTTATCTGAGAACCATTCCAACCCTTCAGGGATTGGGTCTAGTGCAGGCTTCAACAGTGGGAATCTGGATCATTCATACACCCCAATCAACACCAGCAATAATAGTTACATGTTTCAGAAGAACCCCCAAATGAACATTTCAGTCCCCAACATGGAAAACATCAGGAACAAACGCCAGTTTTCAAACATAGATGAGGAAATGTTGTACCCATCAAAGAAATACCTGAGTTCCTCTTGCAATTTCCCTAAGATCAACGCTCAATATGAGAACCCACAATGGAGCTACCTCATGAAACAACCTTCATTGAATCAACAGTTACTTCTGGGTCCACATCTTCAATTTCAGGAATAA 1059 0.4381 MGTPESNLPPGFRFHPTDAELILHYLRKKLASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPGGGGGGSQENIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKYSLPSTEATTVVDEIDQAEEHLFKDTLLPITKSPTPPPQNTLISQKSVSFSNLLDAMDYSMLSSFLSENHSNPSGIGSSAGFNSGNLDHSYTPINTSNNSYMFQKNPQMNISVPNMENIRNKRQFSNIDEEMLYPSKKYLSSSCNFPKINAQYENPQWSYLMKQPSLNQQLLLGPHLQFQE 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1789g00003 352 ProSiteProfiles NAC domain profile. 8 169 IPR003441 GO:0003677|GO:0006355
Gabi1789g00003 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 268 - -
Gabi1789g00003 352 SUPERFAMILY NAC domain 4 169 IPR036093 GO:0003677|GO:0006355
Gabi1789g00003 352 Pfam No apical meristem (NAM) protein 9 142 IPR003441 GO:0003677|GO:0006355
Gabi1789g00003 352 Gene3D NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Gabi1789g00003 352 FunFam NAC transcription factor 56 17 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1789g00003 Gabi-Chr1789 50780 52593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1789g00003 4 351 NAC Transcription Factor Family AT3G04070 52.941 2.17e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1789g00003 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1789g00003 - - vun:114194335 605.134