Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00036 ATGAAGATAACGACAATGCAAGGAAGGATGAGATTGCTGCACTCGGAGATACGAGAGTATCATAGGAAGCACCCAGTTGCTCGTGTTGTTGATGCTAATGATGATTATGAAACACTTCTTAAAGAGGAACCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTTGGTCGATATTTAGACATGCATGAATTGTACCATCAGTATATCAATTCCAAATTTGGAGAGCCAATTGAGTATTCTGCATACCTTGATATTTTCTCAGAAACAGATAAGATTCCACGCAAAATGAAAATGACAAGGCAGTACAGTGAGTATTTGGAGAATCTTTTGGAGTATCTGTTATACTTTTTCCAGCGGACAGAACCCCTGCAAGATCTTGATCGAATTTTCTTAAAGGTAACAACTGAGTTTGAAGAAAATTGGGCTACTGGAAAGGTACAGGGATGGGAGAATGACCTTCAGGAGAATGGACATGTACCTGCTCAGCACGCAGCAATTGATCTTGATTATTATAGTACAGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCATTGGCTGCATTGGGGCTTAAGACTGGCGGTACTGTTCAGCAACGTGCCGAGAGACTCTTCCTTACAAAGCACACGCCTCTTGAAAAGCTGGACAGGAAGCATTTTGCGAAGGGGACACGTGGCTTAGAAAAAAATGGGGTTACTGATGTTCCACAAGAAGATGGAAATTCAAAAGAAATTGCATTAATGGAGGCCAAAATGAAAAAACTCTGTGATTTGTTAGAAGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATACGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGAGGACACTGAGAGCGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTGCCGATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGTTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGCGGGAACTACAGTTATTGGGGGCGTCGGGCCTTCGAAAGACATTTTAAAGAATGGCGTCATCAACATGGGATGCGGTGTCTTGGTATACCAAATACTAAGAACTTCAATGAAATCACATCAATTGAGGAAGCCAAGGATCTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATTTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATTTATAATAAGAAGACATACACTGATTTACAGCGGCAGGGACTTATATGA 1290 0.4171 MKITTMQGRMRLLHSEIREYHRKHPVARVVDANDDYETLLKEEPQIEFSGEEAFGRYLDMHELYHQYINSKFGEPIEYSAYLDIFSETDKIPRKMKMTRQYSEYLENLLEYLLYFFQRTEPLQDLDRIFLKVTTEFEENWATGKVQGWENDLQENGHVPAQHAAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGTRGLEKNGVTDVPQEDGNSKEIALMEAKMKKLCDLLEETIARTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00036 429 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 47 96 IPR031774 -
Gabi1787g00036 429 ProSiteProfiles Zinc finger matrin-type profile. 334 365 IPR000690 GO:0003676|GO:0005634|GO:0008270
Gabi1787g00036 429 Coils Coil 273 300 - -
Gabi1787g00036 429 Pfam Replication stress response SDE2 C-terminal 143 224 IPR025086 -
Gabi1787g00036 429 Pfam SF3a60/Prp9 C-terminal 310 429 IPR024598 GO:0000398|GO:0003723|GO:0005681
Gabi1787g00036 429 PANTHER SPLICING FACTOR SF3A-RELATED 28 155 - -
Gabi1787g00036 429 MobiDBLite consensus disorder prediction 283 303 - -
Gabi1787g00036 429 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00036 Gabi-Chr1787 231615 239204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00036 16 429 C2H2 Transcription Factor Family AT5G06160 75.121 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00036 K12827 - gmx:100815393 765.763