Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00034 ATGAATATTCTCTCACTCATCCTTTTCTTCACATACCTGACACTGGTAGCAAGCATGGAAACATGTTTGGACAGTGTGTGCCAAATAAAGGAGCCAATAATCCGATTCCCGTTCCAGATAGAGGGAAAACAGGAAAAGACATGTGGTTATCCAGGGTTCAAAGTATCCTGCAGTGAAAAGGGCCAAACACTGCTCAAACTACCTAATTCAAGAGAACTCAGCATACAAAGAATAAACTATGCAGCACAACAACTATGGGTAAATGACCCCAACAACTGCATCCCAAAACGACTTCTTTCACTCAACCTCTCAGGGTCTCCATTCGATGCCGTTTACTACCAAGAATTCACCTTCTTTAACTGCTCCTTGAATTTGGAGTACCTCATGTATCGTTACAAACCAATAGCTTGTCTCAGCGACGCTTCTAAGTACGCCGTTTTTGCAACACCTTCCCAGAGTGTGTTTGCTCACTTGTCATCTATTTGTGACTTGGTTGACACGGTTAAGGTTCCTGTTCAGTCGCCGCTTTCCGAGCATGTACTGTCGTCTGACCTCGCCGACGACCTCCGCCTCTCGTGGGATTCGCCGCCGTGCGGAAGGTGTGAGTCCCACGGTGACCGCTGTGGCTTCGAGAACAACAACACTTTTGAACTCCACTGTTCAAAAGTCCCATCAAAAGGGTTTTCCCGTTCTGCAAGTTACGCCTTAGCCATTTGCATAGGGACACCAGTGTTTTTGTGCTTCATTGCAGTAGTGAGTTGCATATGCAGCAGGTACGGAATTGGGACCCACGGTTGGGCTTCGGCTAACGGGAGTGTGCCAGATTTTGAGCCTCTTATTGGCCCAGAGCGCACCAACATTTCGGGCCTTGATGGGCCCACGATTGAATCCTACCCAAAAATAGTTATAGGTGAGAGCAGATGCTTACCCAAGCCCGATGACAAGACCTGCCCAATATGCCTATCAGAGTATATACCCAAAGAGACTGTGAAAACCATACCCGAATGTGGACATTGCTTTCATTCACAATGCATCGATGAATGGCTTCCGCTGAATGCGTCGTGCCCAATTTGCCGAACTTCTCCTCCCAAGTTACCATAA 1101 0.4732 MNILSLILFFTYLTLVASMETCLDSVCQIKEPIIRFPFQIEGKQEKTCGYPGFKVSCSEKGQTLLKLPNSRELSIQRINYAAQQLWVNDPNNCIPKRLLSLNLSGSPFDAVYYQEFTFFNCSLNLEYLMYRYKPIACLSDASKYAVFATPSQSVFAHLSSICDLVDTVKVPVQSPLSEHVLSSDLADDLRLSWDSPPCGRCESHGDRCGFENNNTFELHCSKVPSKGFSRSASYALAICIGTPVFLCFIAVVSCICSRYGIGTHGWASANGSVPDFEPLIGPERTNISGLDGPTIESYPKIVIGESRCLPKPDDKTCPICLSEYIPKETVKTIPECGHCFHSQCIDEWLPLNASCPICRTSPPKLP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00034 366 Pfam Wall-associated receptor kinase C-terminal 158 220 IPR032872 -
Gabi1787g00034 366 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 362 IPR046948 -
Gabi1787g00034 366 SMART ring_2 317 358 IPR001841 -
Gabi1787g00034 366 Pfam Ring finger domain 316 359 IPR001841 -
Gabi1787g00034 366 SUPERFAMILY RING/U-box 311 362 - -
Gabi1787g00034 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 364 IPR013083 -
Gabi1787g00034 366 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Gabi1787g00034 366 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00034 Gabi-Chr1787 228481 230344 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00034 20 362 C3H Transcription Factor Family AT2G46495 37.176 3.09e-67 214