Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00022 ATGATTTGTTTTCTCTTGCTTATCTTGTTTACAGCTTTGGCAGTTTTGTTCTGTTTTGCTGCTAAATGTGTACTTGGATCTCCATGCGTCATTGTCTTATTGATCCGTAAATGGCGAAGGAGGCATTTATCCATGTATGACACCATTGAAGATTATCTACGAAGTGACAATAACATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAAGATAACAGAACGATTCAAGACAAAGCTAGGGAATGGAGGTTATGGCTCTGTCTTCAAAGGACAACTTCGAAGTGGCCGTTTAGTAGCCGTCAAGATATTGGATAAAGCCAAAGCCAGTGGTCAAGATTTCATCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTCAACGTTGTGCAGCTCATTGGTTTTTGTGTTGAGGGATCAAAGCGTGCTCTTATATACGAATTCATGCCAAATGGGTCTCTCGAAAAATACATTTTTTCTCATGAAGAGAGTTCTTCCTTAAGTTGTGAAAAATTGTTTGCCATTTCTCTTGGAGTGGCTCGTGGCATTGAATATATGCATAATGGGTGCAACATGAAAATTCTACACTTTGATATCAAGCCTCATAACATCCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCAAGACTTTATCTTACAGATAGTAGTATTGTGTCTTTGACTGCAGCAAGAGGAACCTTAGGATACATGGCACCTGAGCTCTTCTACAGAAATGTTGGCACTGTGTCATACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCTGGTAGAAGGAAGAACTGGAATGAATATTTGGCTGAGGATTCAAGCCAAAATTATTTCCCTTACTGGGTTCATGATCGGTTACATGATGGAAGGGAATTTACAATTGAAAATGACACAGATGAGGAGATGAAATTGGCAAAGAAAATGTTCATTGTAGCATTGTGGTGTATACAGACAAGCCCTAGCGATCGTCCTCCGATGGATAAAGTGTTAGAGATGCTTGAAGAAGATGAGGAATTACAAATGCCTAGTAAGGCTCCTTATCTACATCCACAAGATTCATCAGCAAAGGATGCTAGAGATCATAGCAGCTCAGTGTCATCCTCTGAAATAACAATAAGTGGTTCCAATGAGTCAATCTGA 1176 0.392 MICFLLLILFTALAVLFCFAAKCVLGSPCVIVLLIRKWRRRHLSMYDTIEDYLRSDNNIMPIRYSYKDIKKITERFKTKLGNGGYGSVFKGQLRSGRLVAVKILDKAKASGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHEESSSLSCEKLFAISLGVARGIEYMHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYLTDSSIVSLTAARGTLGYMAPELFYRNVGTVSYKADVYSFGMLLMEMAGRRKNWNEYLAEDSSQNYFPYWVHDRLHDGREFTIENDTDEEMKLAKKMFIVALWCIQTSPSDRPPMDKVLEMLEEDEELQMPSKAPYLHPQDSSAKDARDHSSSVSSSEITISGSNESI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00022 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Gabi1787g00022 391 SMART serkin_6 74 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00022 391 SUPERFAMILY Protein kinase-like (PK-like) 55 346 IPR011009 -
Gabi1787g00022 391 MobiDBLite consensus disorder prediction 344 391 - -
Gabi1787g00022 391 FunFam PR5-like receptor kinase 149 355 - -
Gabi1787g00022 391 ProSiteProfiles Protein kinase domain profile. 74 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00022 391 FunFam serine/threonine-protein kinase PBS1-like 45 148 - -
Gabi1787g00022 391 Gene3D Phosphorylase Kinase; domain 1 50 148 - -
Gabi1787g00022 391 PANTHER RUST RESISTANCE KINASE LR10-RELATED 47 366 IPR045874 GO:0004672
Gabi1787g00022 391 MobiDBLite consensus disorder prediction 376 391 - -
Gabi1787g00022 391 Gene3D Transferase(Phosphotransferase) domain 1 149 361 - -
Gabi1787g00022 391 Pfam Protein kinase domain 77 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00022 391 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00022 Gabi-Chr1787 169542 170717 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00022 63 375 Receptor kinase-like Gene Family AT5G38280 51.402 3.30e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1787g00022 Pkinase 7.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00022 - - psat:127093935 556.984