Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00021 ATGGGTACTTGTTTGGTATTAGTATCCTCTTCCATTGGTTTGTTGTTCATGATTTTCTTTAATGCACAGCTTGCACTTGGAACGGTTAACGACTGTCCAGATTTATCATGCGGAAAACAGGTCATCCGATTCCCTTTCAGAATCGAAGGCCGCCATCCACAATTCTGTGGCTATCCCGGCTTTGATTTATTTTGTTCCGAAAGTAACGAGACTGTGATTGAACTCCCAAACTCAGTGAAGCTCAATGTCAATACTATTGACTACCAACAACAAACTATTGAATTATCTGACCCTTTTGGATGCCTTTCCAGGCAGCTCCACAACTTCACTCTATCAGCTTCCCATTTTCAGTTCAATGGATATGATGGTGGCTATAACTTTTTCAATTGTTCACTGACGAATAGATATATGGACTCCTATTTGATTCCATGCCTAACCACCTCAACCTCTCAAGCATACGCTATTCCATCTGATATACTCATCGATTACCTGCCCCTTTCATTTTGCACCAAAATGTTTAATATTTCATCCTTCCTTTCTGGTTCTGTCAACGAAAATATTCTTCTTTTGACATGGTCCGTGCCAAATTGTAAACATTGCGAATCAGAAGGAAACAGGTGTGGATGGAAGAATATTACTGCCAAGAATATTACTGCCAAGAATGAAGTATATTGTTTGGCAAATCGCCAAGGTTCATCAACAGCTCTAGTGACCACAGGATCAGTCCTAGGGTCGTTTTTTCTTGTCCTGTTAACGGGTGCTGTCTTCCACATCTATGACTCTTACATTCAACGGAAAGAAAAACAAGCAATTTTTGAAAAGTTTCTACAAGACTATAGAGCTCTTAAGCCCACCAGATACTCTTATGTGGAAATTAAGAGAATCACCAACAATTTTGACGACAAGCTAGGACAGGGAGCCTATGGAACTGTGTATAAAGGAAGCATTTCCAAAGAAATTATTGTTGCTGTGAAGATCCTGAATGATTCCAAAAGAAATGGGGAAGAGTTCATTAATGAAGTTGGCACAATGGGTAGAATCCACCATGTTAACATTGTTCGCTTGGTCGGTTTCTGTGCAGATGGCTTTACAAGAGCTCTTATTTATGAGTTCTTACCAAATGGTTCACTACAGAAGTTCATAAATTCACCAGAGAACAGGCAGAACTTCCTTGGTTGGAAAAAGATGCAGGAAATTGCTTTAGGCATAGCTAAGGGAATTGAGTACCTTCACCAAGGTTGTGACCAGCGCATTCTCCATTTTGATATCAAACCTCAAAATGTGTTACTAGACCACAACTTTGCTCCCAAAATATGTGACTTTGGTCTAGCCAAGTTGTGTTCAAGGGATCAGAGCATAGTGTCGATGACTACAGCTAGAGGAACTTTGGGCTACATTGCTCCTGAAGTTTTCTCACGAAACTTTGGAAATGTATCCTACAAGTCAGATGTTTATAGTTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACTGAGGACATAGAAGAAAACACTAGCCATGTTCACTACCCTGAATGGATTTATAATCTTTTAGAAGAACGGGAGGAAATGAGAATTCATATTGATGATGAAGGGGATGCAATAATTGCGAGGAAACTAGCAATTGTGGGACTTCGGTGCATCCAGTGGCATGCTATGGATAGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACGTAGACAGATCCCCAATACCTCCTAATCCTTTTGCTTCTGCAGGACCAAGGAGAAACACTGCAACTGCAAGTGTGGCTGCGGCTGCGAGACAACTAACCCAAGATTTAGAAGTAATCCAAGAGTTAGATTGA 1845 0.4065 MGTCLVLVSSSIGLLFMIFFNAQLALGTVNDCPDLSCGKQVIRFPFRIEGRHPQFCGYPGFDLFCSESNETVIELPNSVKLNVNTIDYQQQTIELSDPFGCLSRQLHNFTLSASHFQFNGYDGGYNFFNCSLTNRYMDSYLIPCLTTSTSQAYAIPSDILIDYLPLSFCTKMFNISSFLSGSVNENILLLTWSVPNCKHCESEGNRCGWKNITAKNITAKNEVYCLANRQGSSTALVTTGSVLGSFFLVLLTGAVFHIYDSYIQRKEKQAIFEKFLQDYRALKPTRYSYVEIKRITNNFDDKLGQGAYGTVYKGSISKEIIVAVKILNDSKRNGEEFINEVGTMGRIHHVNIVRLVGFCADGFTRALIYEFLPNGSLQKFINSPENRQNFLGWKKMQEIALGIAKGIEYLHQGCDQRILHFDIKPQNVLLDHNFAPKICDFGLAKLCSRDQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKSDVYSYGMMLLETIGGRKITEDIEENTSHVHYPEWIYNLLEEREEMRIHIDDEGDAIIARKLAIVGLRCIQWHAMDRPSMQMVVQMLEGDVDRSPIPPNPFASAGPRRNTATASVAAAARQLTQDLEVIQELD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00021 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Gabi1787g00021 614 ProSiteProfiles Protein kinase domain profile. 297 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00021 614 SMART serkin_6 297 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00021 614 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00021 614 SUPERFAMILY Protein kinase-like (PK-like) 280 569 IPR011009 -
Gabi1787g00021 614 FunFam PR5-like receptor kinase 372 579 - -
Gabi1787g00021 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 268 586 IPR045874 GO:0004672
Gabi1787g00021 614 Gene3D Phosphorylase Kinase; domain 1 272 371 - -
Gabi1787g00021 614 Pfam Wall-associated receptor kinase galacturonan-binding 32 97 IPR025287 GO:0030247
Gabi1787g00021 614 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Gabi1787g00021 614 FunFam S-receptor-like serine/threonine-protein kinase 262 371 - -
Gabi1787g00021 614 Gene3D Transferase(Phosphotransferase) domain 1 372 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00021 Gabi-Chr1787 161702 164218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00021 10 587 Receptor kinase-like Gene Family AT1G66910 36.421 6.60e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1787g00021 Pkinase 4.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00021 - - lang:109328752 855.899