Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00020 ATGTCATCCTTGGCTGCAGCATTTTTGGTGGTGTTCCTGATCCTACTCTATGGATGCTGTAACTGCAAGCCAATGGATGCTGAACTGTGTTCTGGTCGGTGCGGGATTCATAACATAAGCCATCCTTTCAGGCTGAAAGACAGTCCAGACAAGTGTGGTGATCCGAGGTACAACCTATCCTGCGAGGACAGCCAATTGATGCTGTATTTGGGATTAGGAAAATACTATGTAAAGTCCATTAATTACCACAACCTCACAATACGACTAGTGGATGTGGGTGTCAATCATGGTTACTCCTCCCTCCCTCGTTACTCTCTAACCTCCTACAATTTCAGCTCTCATACGCCATATCGAGTGTTTATTGATTCGTACAGAGATAGATTGGGAAAGCTTATGTTATATCTTAGCTGCCCAAATCCTCCGGTGGGTTCTTCTGATGTGTATGTTGATGACGCTGCAAGCTGCATGAATAGTTCCTATGAAGTTGGGAGCACTTTCTATGTGAATGTTGATGGCAAATCTCTATGGGATTTGGGGCTGAGAGACTCGTGTCGCTTGGAGTTAATGTATCTGACATCATGGCCTGCTCAAATCAATAACCGCAACATTTCATGCAGAGACATCCATGATACGCTGCTTTATGGCTTCGAACTTTCTTGGCTTCATAGTCCCTGTAAAGATCGTCAGTATTTCAAGCACTACAGTGGTTGTGTATTAGGCAGGTCAAATTTATTGCAGCTGCTCCAAATATGCCTAATGGGTTCTATAGCAGCTTTGGAAGTTTTGTTCTTATATTGTGTTGCTAAATGTGTACTTGGATCTCCATTCGTCATTGTCTTATTGATCCGTAAATGGCGACGGAGGCATTTATCTATGTATGACACCATTGAAGATTTTCTACGAAGTGATAATAATATCATGCCTATAAGGTACTCTTACAAAGACATCAAGAAGATAACAGAACGATTCAAGACAAAGTTAGGGAATGGAGGTTATGGCTCTGTCTTCAAAGGACAACTTCGAAGTGGCCGTTTAGTGGCCGTCAAGATATTGGATAAAGCCAAAGCCAGTGGTCAAGATTTCATCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTCAACGTTGTGCAACTCATTGGTTTTTGTGTTGAGGGATCAAAGCGTGCTCTTATATACGAATTCATGCCAAATGGGTCTCTCGAAAAATACATTTTTTCTCATGAAGAGAGTTCTTTCTTAAGTTGTGAAAAATTGTTTGCCATTTCTCTTGGAGTGGCTCGTGGCATTGAATATATGCATAATGGGTGCAACATGAAAATTCTACACTTTGATATCAAGCCTCATAACATCCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCAAGACTTTATCCTACAGATAGTAGTATTGTGTCTTTGACTGCAGCAAGAGGAACCTTAGGATACATGGCACCTGAGCTCTTCTACAGAAATGTTGGCACTGTGTCATACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCTGGTAGAAGGAAGAATTGGAATGAATATTTGGCTGAGGATTCAAGCCTAAATTACTTCCCTTACTGGGTTTATGATCGGTTACATGATGGAAGAGAATTTACAATTGAAAATGACACAGATGAGGAGATGAAATTGGCAAAAAAAATGTTCATTGTAGCATTGTGGTGTATACAGACAAGCCCTAGCGATCGTCCTCCGATGGATAAAGTGTTAGAGATGCTCAAAGAAGATGAGGAATTACAAATGCCGAGTAAGGCTCCTTATCTACATCCAGAAGATCTACCAGCAAAGGATGCTAGAGGTCATAGCAGCTCAATGCCATCCTCTGAGATATCAATAAGTGGTTCCAATGAGTCAATCTGA 1917 0.41 MSSLAAAFLVVFLILLYGCCNCKPMDAELCSGRCGIHNISHPFRLKDSPDKCGDPRYNLSCEDSQLMLYLGLGKYYVKSINYHNLTIRLVDVGVNHGYSSLPRYSLTSYNFSSHTPYRVFIDSYRDRLGKLMLYLSCPNPPVGSSDVYVDDAASCMNSSYEVGSTFYVNVDGKSLWDLGLRDSCRLELMYLTSWPAQINNRNISCRDIHDTLLYGFELSWLHSPCKDRQYFKHYSGCVLGRSNLLQLLQICLMGSIAALEVLFLYCVAKCVLGSPFVIVLLIRKWRRRHLSMYDTIEDFLRSDNNIMPIRYSYKDIKKITERFKTKLGNGGYGSVFKGQLRSGRLVAVKILDKAKASGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHEESSFLSCEKLFAISLGVARGIEYMHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYPTDSSIVSLTAARGTLGYMAPELFYRNVGTVSYKADVYSFGMLLMEMAGRRKNWNEYLAEDSSLNYFPYWVYDRLHDGREFTIENDTDEEMKLAKKMFIVALWCIQTSPSDRPPMDKVLEMLKEDEELQMPSKAPYLHPEDLPAKDARGHSSSMPSSEISISGSNESI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00020 638 Pfam Protein kinase domain 324 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00020 638 SMART serkin_6 321 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00020 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gabi1787g00020 638 MobiDBLite consensus disorder prediction 620 638 - -
Gabi1787g00020 638 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Gabi1787g00020 638 PANTHER RUST RESISTANCE KINASE LR10-RELATED 293 612 IPR045874 GO:0004672
Gabi1787g00020 638 ProSiteProfiles Protein kinase domain profile. 321 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00020 638 Gene3D Phosphorylase Kinase; domain 1 299 395 - -
Gabi1787g00020 638 FunFam PR5-like receptor kinase 396 602 - -
Gabi1787g00020 638 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Gabi1787g00020 638 Pfam Wall-associated receptor kinase galacturonan-binding 30 91 IPR025287 GO:0030247
Gabi1787g00020 638 SUPERFAMILY Protein kinase-like (PK-like) 303 592 IPR011009 -
Gabi1787g00020 638 FunFam serine/threonine-protein kinase PBS1-like 292 395 - -
Gabi1787g00020 638 MobiDBLite consensus disorder prediction 600 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00020 Gabi-Chr1787 152477 161227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00020 302 611 Receptor kinase-like Gene Family AT5G38280 51.724 1.89e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1787g00020 Pkinase 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00020 - - psat:127093935 744.577