Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00019 ATGTCATCCTTGGCTGCAGCATTTTTGGTGGTGTTCCTGATCCTACTCTATGGATGCTGTAACTGCAAGCCAATGGATGCTGAACTGTGTTCTGGTCGGTGCGGGATTCATAACATAAGCCATCCTTTCAGGCTGAAAGACAGTCCAGACAAGTGTGGTGATCCGAGGTACAACCTATCCTGCGAGGACAGCCAATTGATGCTGTATTTGGGATTAGGAAAATACTATGTAAAGTCCATTAATTACCACAACCTCACAATACGACTAGTGGATGTGGGTGTCAATCATGGTTACTCCTCCCTCCCTCGTTACTCTCTAACCTCCTACAATTTCAGCTCTCATACGCCATATCGAGTGTTTATTGATTCGTACAGAGATAGATTGGGAAAGCTTATGTTATATCTTAGCTGCCCAAATCCTCCGGTGGGTTCTTCTGATGTGTATGTTGATGACGCTGCAAGCTGCATGAATAGTTCCTATGAAGTTGGGAGCACTTTCTATGTGAATGTTGATGGCAAATCTCTATGGGATTTGGGGCTGAGAGACTCGTGTCGCTTGGAGTTAATGTATCTGACATCATGGCCTGCTCAAATCAATAACCGCAACATTTCATGCAGAGACATCCATGATACGCTGCTTTATGGCTTCGAACTTTCTTGGCTTCATAGTCCCTGTAAAGATCGTCAGTATTTCAAGCACTACAGTGGTTGTGTATTAGGCAGGTCAAATTTATTGCAGCTGCTCCAAATATGCCTAATGGGTTCTATAGCAGACATCAAGAAGATAACAGAACGATTCAAGACAAAGTTAGGGAATGGAGGTTATGGCTCTGTCTTCAAAGGACAACTTCGAAGTGGCCGTTTAGTGGCCGTCAAGATATTGGATAAAGCCAAAGCCAGTGGTCAAGATTTCATCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTCAACGTTGTGCAACTCATTGGTTTTTGTGTTGAGGGATCAAAGCGTGCTCTTATATACGAATTCATGCCAAATGGGTCTCTCGAAAAATACATTTTTTCTCATGAAGAGAGTTCTTTCTTAAGTTGTGAAAAATTGTTTGCCATTTCTCTTGGAGTGGCTCGTGGCATTGAATATATGCATAATGGGTGCAACATGAAAATTCTACACTTTGATATCAAGCCTCATAACATCCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTTGCAAGACTTTATCCTACAGATAGTAGTATTGTGTCTTTGACTGCAGCAAGAGGAACCTTAGGATACATGGCACCTGAGCTCTTCTACAGAAATGTTGGCACTGTGTCATACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTAATGGAGATGGCTGGTAGAAGGAAGAATTGGAATGAATATTTGGCTGAGGATTCAAGCCTAAATTACTTCCCTTACTGGGTTTATGATCGGTTACATGATGGAAGAGAATTTACAATTGAAAATGACACAGATGAGGAGATGAAATTGGCAAAAAAAATGTTCATTGTAGCATTGTGGTGTATACAGACAAGCCCTAGCGATCGTCCTCCGATGGATAAAGTGTTAGAGATGCTCAAAGAAGATGAGGAATTACAAATGCCGAGTAAGGCTCCTTATCTACATCCAGAAGATCTACCAGCAAAGGATGCTAGAGGTCATAGCAGCTCAATGCCATCCTCTGAGATATCAATAAGTGGTTCCAATGAGTCAATCTGA 1746 0.4158 MSSLAAAFLVVFLILLYGCCNCKPMDAELCSGRCGIHNISHPFRLKDSPDKCGDPRYNLSCEDSQLMLYLGLGKYYVKSINYHNLTIRLVDVGVNHGYSSLPRYSLTSYNFSSHTPYRVFIDSYRDRLGKLMLYLSCPNPPVGSSDVYVDDAASCMNSSYEVGSTFYVNVDGKSLWDLGLRDSCRLELMYLTSWPAQINNRNISCRDIHDTLLYGFELSWLHSPCKDRQYFKHYSGCVLGRSNLLQLLQICLMGSIADIKKITERFKTKLGNGGYGSVFKGQLRSGRLVAVKILDKAKASGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHEESSFLSCEKLFAISLGVARGIEYMHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYPTDSSIVSLTAARGTLGYMAPELFYRNVGTVSYKADVYSFGMLLMEMAGRRKNWNEYLAEDSSLNYFPYWVYDRLHDGREFTIENDTDEEMKLAKKMFIVALWCIQTSPSDRPPMDKVLEMLKEDEELQMPSKAPYLHPEDLPAKDARGHSSSMPSSEISISGSNESI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00019 581 Pfam Protein kinase domain 267 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00019 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Gabi1787g00019 581 FunFam serine/threonine-protein kinase PBS1-like 243 338 - -
Gabi1787g00019 581 MobiDBLite consensus disorder prediction 563 581 - -
Gabi1787g00019 581 FunFam PR5-like receptor kinase 339 545 - -
Gabi1787g00019 581 PANTHER RUST RESISTANCE KINASE LR10-RELATED 255 555 IPR045874 GO:0004672
Gabi1787g00019 581 ProSiteProfiles Protein kinase domain profile. 264 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1787g00019 581 SUPERFAMILY Protein kinase-like (PK-like) 253 535 IPR011009 -
Gabi1787g00019 581 Gene3D Phosphorylase Kinase; domain 1 241 338 - -
Gabi1787g00019 581 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Gabi1787g00019 581 MobiDBLite consensus disorder prediction 543 581 - -
Gabi1787g00019 581 Pfam Wall-associated receptor kinase galacturonan-binding 30 91 IPR025287 GO:0030247
Gabi1787g00019 581 Gene3D Transferase(Phosphotransferase) domain 1 339 548 - -
Gabi1787g00019 581 SMART serkin_6 264 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00019 Gabi-Chr1787 152477 161227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00019 255 554 Receptor kinase-like Gene Family AT5G38280 52.459 2.04e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi1787g00019 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00019 - - qsu:112023377 570.081