Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00017 ATGACTTTTCAGCAAGAAAAATTTGTTAGGTTTCAGGATTGGAATTCAGACAAGGGTTCTGAGAGAAACTCTCCTGCAATTCACATAACAAGCTCGGGGAGAATTAGAACTACACTAAGCTCAGTTTCCAATAAGTTTCAAAGGGGATTGGAATCTACTTCCAAGGGGATAAATAGATTTAGAAAATCATTCAAATCTTTTCCCCGTGACAGTTTTCTTGCTAGAAATTTTAGTTCTAAAAAGAAAATCCTTGATCCGCAGGGCCCTTTCCTTCAAAAGTGGAACAAGATATTTGTATTATTGTGTCTTATTGCTGTATCACTAGATCCTTTGTTCTTCTATGTCCCCGTGATTGATGATGACAAGAAATGTCTTTCACTGGACAGAAAAATGGAAATTACGGCAACTGTTTTAAGATCTTTCTCTGATATCTTTTACATAATTCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGGGTGTTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAACGAGGTATCTGTCATCATACTTCTTAATCGACATTCTTGCCGTTCTTCCCCTCCCACAGGCGGTGATTCTAATTATCATTCCAAAGATGAGAGGCTTTGAATCCCTGAATACGAAGAACTTGCTGAAATTTATTGTTTGCTTCCAGTATGTGCCACGTCTTTTAAGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACCGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTAGCAAGTCATGTTATTGGTGCATTTTGGTACTTATTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCATGTCGAAGAAATACCACATGTAACAAGGCAGATATGTATTGTGATAATCGTCAAGGTTTGGGCACAATTTCAACATTCCTGAATGCTTCTTGCCCAATACAGGATGCAAATAAAACGCTCTTTGATTTTGGAATATTCCTTGATGGCCTTCAATCTGGGGTCGTGGAATCAAAAGATTTTCCACAAAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATCTGAGTTCTCTTGGTCAGAATCTGACAACAAGTACCTATGTTTGGGAAATCAGCTTTGCAATTTTCATTTCCATAGCTGGTTTGGTTTTATTTGCATTCCTAATTGGAAATATGCAGACATATTTGCAATCAACAACTACTAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAGCAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAACAATACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAATTTGATTCGCAATCTTCCCAAGGATTTAAGAAGGGATATTAAACGTCATCTTTGCTTGGCTTTGTTGATGAGGGTGCCAATGTTTGAGAAAATGGATGAGCAACTTTTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTATACACAGAACAAAGCTGCATTGTGCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGTTATTGACTGTGACAACTAATGGTGGAAGAACAGGTTTCTTTAACTCTGAATTTCTCAAGGCTGGTGATTTTTGTGGAGAGGAGCTTCTTACATGGGCATTAGATCCTCATAACTCATCAAACCTTCCAATCTCAACTAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCATTTGCTCTAAAAGCTGATGACTTGAAGTTTGTTGCATCTCAGTTTCGGCGCCTTCACAGTAAGCAGCTTCGCCATACTTTCAGGTTCTACTCACAACAATGGCGTACGTGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGATATGGTAAGAAGAAGCTTGAAGAGTCTCTGAGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAGGCAGGTGGTAGTTCACCTAGTCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCTAATGCACTTAGAGCTTTACGTAGAAATGGCACAAGGAAGACAAGGGTGCCAGACAGAATATCACCTATACTGCTTCAGAAGCCTGCTGAACCTGATTTTACTTCTGAGGAGCAATAG 2148 0.4036 MTFQQEKFVRFQDWNSDKGSERNSPAIHITSSGRIRTTLSSVSNKFQRGLESTSKGINRFRKSFKSFPRDSFLARNFSSKKKILDPQGPFLQKWNKIFVLLCLIAVSLDPLFFYVPVIDDDKKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIATRYLSSYFLIDILAVLPLPQAVILIIIPKMRGFESLNTKNLLKFIVCFQYVPRLLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRRNTTCNKADMYCDNRQGLGTISTFLNASCPIQDANKTLFDFGIFLDGLQSGVVESKDFPQKFFYCFWWGLRNLSSLGQNLTTSTYVWEISFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEQSCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALDPHNSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYGKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRALRRNGTRKTRVPDRISPILLQKPAEPDFTSEEQ 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00017 715 Pfam Cyclic nucleotide-binding domain 507 597 IPR000595 -
Gabi1787g00017 715 Gene3D Helix hairpin bin 412 477 - -
Gabi1787g00017 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 710 - -
Gabi1787g00017 715 Coils Coil 638 658 - -
Gabi1787g00017 715 SMART cnmp_10 486 617 IPR000595 -
Gabi1787g00017 715 SUPERFAMILY cAMP-binding domain-like 415 608 IPR018490 -
Gabi1787g00017 715 CDD CAP_ED 486 617 IPR000595 -
Gabi1787g00017 715 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Gabi1787g00017 715 Gene3D Jelly Rolls 484 604 IPR014710 -
Gabi1787g00017 715 ProSiteProfiles cAMP/cGMP binding motif profile. 486 570 IPR000595 -
Gabi1787g00017 715 Gene3D - 95 410 - -
Gabi1787g00017 715 MobiDBLite consensus disorder prediction 687 715 - -
Gabi1787g00017 715 FunFam Cyclic nucleotide-gated ion channel 1 484 602 - -
Gabi1787g00017 715 SUPERFAMILY Voltage-gated potassium channels 85 408 - -
Gabi1787g00017 715 Pfam Ion transport protein 94 413 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00017 Gabi-Chr1787 120732 128555 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00017 1 714 Ion Channels AT5G53130 78.830 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00017 K05391 - gmx:100815774 1308.51