Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00012 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCAGAAAGGGAATATGTTGGTGCAAAGAAGTTTGCTGTCAAGGCTCTAAATCTGTATCCTGATTTGGAGGATCTTTCCCAATTTCTGACCACTCTTGATATTTATATCTCTGCCGAGAATAAAGTAAGTGGAGAAATGGATTGGTATGGTATACTTGGGGTGAGCCCCTTTGCTGATGATGAGACTGTTAGAAAGCAATACAGAAAGTTGGCTCTCACCCTTCACCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTCAAGCTGGTTTCTGAGGCCTGGAGTTTGCTATCAGATAAGACCAAGAGACTAGAATATAACCAGAAGAGGAGTTTGAAAGGTTTTCAACATAATACTCCCAACCATGTCGGGTCTCAATCAGATGCACCCAGTTCAAATGGTTTTTACAATTTCAAGAAGAATGTAACTACAAATGTGAAGACTGGAAATAGTAATGCTCGAGCACCTCGGGCACCTTCAACTTCGGTTCCTCCTCCACATAAAAAGGCTGAAACCTTTTGGACTATCTGTAATAGGTGCAGGACACATTATGAATATCTCAGGATTTATTTGAATCATACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCTGTAGAGAGGGGTCCGCCTCCCAATGTTTTTAAGTCACCAAGCTGGTCTTCTCGGCAACAGCATCAGAATTCTCAACATCATACTGGAGGTAATAATACAAACTTTCAGTGGGGTTCTCACTCCAGAATGGCTGGTTTTGGAAGCACGGATGGATCATCATCTGTTGCTGCTCAAGCTGCCAGTGTTGTGCAGCAGGCAAGTGAGAAAGTGAGGAGAGATGGAGCACCTTCAATTGCTGAATGGGAGAGGAGTCAAATGTCTAAGAGGCCTGATGGTTCTTTTCATAAAGTTGAAAAACCCTTGAGAAAAAGGAGGACAGATGATATTCGTATGAATGGTTATCAAGGATTCATGGCAAATAATATGGCCACGGGACATGGAGCGGCCAGTTTGGGTTCTGAATCAGGAAAGGCTAACTTGGAAACAGAAAGGAATTATGGTATTTCAGGAAAGCATTACAGCACAAGAGAGTTGTCAATGTTTGAAATACGAAACATGTTGATGGATAAGTCACGGATTGAAATTCGTAAGAAACTTCAAGAATGGAGATCAATGGCTGAAGCTAAGATTATCAACAAGGACAAAGAGAATAAGAGACAGAAAAGCACATTTAATGATAAAACAACTGGTTCTGAGAAGCATGGAGAGTCCACTGTCAATGGTAACAGGCGTCTGGACGGTAATTCTTTCCCTGTCACATCTGATGATACAGTTAAGAACCAAGCCTATGTTACAATCAATGTTCCAGACCCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAATTCCTTTGCGGAGGACCAGGTCTGGGCTGCTTATGATGATGACGATGGAATGCCTCGATATTATGCTAGAATTCAGAAGGTGATGTCCATAAAGCCATTTAGAATGCGTATCAGTTGGCTTAATTCTCGAAGCAACAGTGAATTGGGCCCAATTGATTGGGTAGGTTCTGGTTTTTACAAAACTTGTGGGGATTTCAGGGCTGGCAAGCATGAAATAACTGAATCATTAAATTCATTTTCACACAAGGTTAGGTGGACAAAAGGCACCAGAGGAATTATTCGCATATTTCCTGGAAAGGGGGAAGTCTGGGCTATTTATAGAAACTGGTCTCCTGATTGGAGCGAACATACTCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTTCTTGAAGATTTCGATGAAGAGCAAGGTATTTTAGTTACCCCCCTTATTAAGGTTGCCGGTTTTAGGACAGTGTTTCAAAGGCACATGGACCATGATCAGGTGAGGAGGATTCCTAAAGAGGAGATGTTTAGATTCTCTCATCAGGTTCCTAATTACTTGCTTACTGGCCAAGAAGCTCATAATGCTCCAAAGGACTGTCGAGAGTTGGATCCAGCAGCTACTCCTTTAGACCTCCTTCAGATAATCACAGAAGCTAATGAGGCATTGGATGATGTTTAG 2139 0.4184 MMECNKDEAVRAKEIAERKFSEREYVGAKKFAVKALNLYPDLEDLSQFLTTLDIYISAENKVSGEMDWYGILGVSPFADDETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTPNHVGSQSDAPSSNGFYNFKKNVTTNVKTGNSNARAPRAPSTSVPPPHKKAETFWTICNRCRTHYEYLRIYLNHTLLCPNCNEAFVAVERGPPPNVFKSPSWSSRQQHQNSQHHTGGNNTNFQWGSHSRMAGFGSTDGSSSVAAQAASVVQQASEKVRRDGAPSIAEWERSQMSKRPDGSFHKVEKPLRKRRTDDIRMNGYQGFMANNMATGHGAASLGSESGKANLETERNYGISGKHYSTRELSMFEIRNMLMDKSRIEIRKKLQEWRSMAEAKIINKDKENKRQKSTFNDKTTGSEKHGESTVNGNRRLDGNSFPVTSDDTVKNQAYVTINVPDPDFHNFDLDRAENSFAEDQVWAAYDDDDGMPRYYARIQKVMSIKPFRMRISWLNSRSNSELGPIDWVGSGFYKTCGDFRAGKHEITESLNSFSHKVRWTKGTRGIIRIFPGKGEVWAIYRNWSPDWSEHTPDEVIHKYDMVEVLEDFDEEQGILVTPLIKVAGFRTVFQRHMDHDQVRRIPKEEMFRFSHQVPNYLLTGQEAHNAPKDCRELDPAATPLDLLQIITEANEALDDV 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00012 712 MobiDBLite consensus disorder prediction 236 278 - -
Gabi1787g00012 712 MobiDBLite consensus disorder prediction 420 459 - -
Gabi1787g00012 712 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Gabi1787g00012 712 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Gabi1787g00012 712 SMART dnaj_3 66 123 IPR001623 -
Gabi1787g00012 712 MobiDBLite consensus disorder prediction 135 179 - -
Gabi1787g00012 712 MobiDBLite consensus disorder prediction 420 447 - -
Gabi1787g00012 712 Gene3D DnaJ domain 64 176 IPR036869 -
Gabi1787g00012 712 PRINTS DnaJ domain signature 87 102 IPR001623 -
Gabi1787g00012 712 PRINTS DnaJ domain signature 103 123 IPR001623 -
Gabi1787g00012 712 PRINTS DnaJ domain signature 69 87 IPR001623 -
Gabi1787g00012 712 MobiDBLite consensus disorder prediction 135 187 - -
Gabi1787g00012 712 PANTHER BNAC03G44070D PROTEIN 2 695 - -
Gabi1787g00012 712 MobiDBLite consensus disorder prediction 237 278 - -
Gabi1787g00012 712 CDD DnaJ 67 120 IPR001623 -
Gabi1787g00012 712 SUPERFAMILY Chaperone J-domain 58 127 IPR036869 -
Gabi1787g00012 712 Pfam DnaJ domain 67 128 IPR001623 -
Gabi1787g00012 712 Pfam Domain of unknown function (DUF3444) 472 678 IPR024593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00012 Gabi-Chr1787 84739 89599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00012 5 233 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.802 4.60e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00012 - - gmx:100814722 1210.28