Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1787g00011 ATGTCGTATATGTTCCTTCTCTTTGTCACTTTCAAGATTATCAAGAAGAAGCTCACAAAGATACAGGAAGCAATGGGGTTTCAAACATCACATAGCACTAAAAAGATAGCATTGCCTATATTCAAAGCAAATGAGGACTCAAGCGATGCTCATGAGCACTCTTTAATTCAAAGGGCACTGAACTTGACTGATCAGACTCTAACCAATACCAAGTTCATTACCTCTGGCTATGATTCATGGATGGTAAGGCATCCTTCCGCATTGCACTCGTTCAATAGATTGATGGAAGAAGCCATTGGAAAGAGGATTGTCCTTTTTTTAGACTACGATGGCACCTTATCACCAATTGTAAATGATCCTGATCGTGCTTTCATGTCTGATGAGATGCGTGCAGCAGTATGTGAAGTTGCTACTTATTTTCCAACGGCAATAATTAGTGGAAGAAGCAGAGATAAGGTTAAAGATTTCGTGAAGTTAAATAATTTATATTATGCTGGGAGCCATGGCATGGACATAATGGCACCATCAATGCCCGATGGATCTTCTGATTGTGACACTGCCCTTAAAACAAATGGCAATGAAGTTCCCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAGTTCGAGAGATATTAAGAAGATTAGAGAATGGAGTAAAGGAGATAGAAGGTGCAAAGGTAGAGGACAACAGATTCTGCATCTCTGTACATTTCCGGCATGTTCAAGAAAAGGATTATGGCATTCTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAATAATCCACAATTTTGCTTAACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAGAATGGAACAAAGGTAATGCAGTAGAGTATTTTCTTGACACACTAGGATTAAGCAGTTCCAGCAATATCCTTCCTGTGTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGTCATACAGAGAGGAGGGCAAGGTTATCCAATTATAGTGACTTCAATTCAAAGAGAAACAAATGCTTTGTACTCTTTGCGTGACCCATCGGAAGTACTAATCTTCTTGTCCAAGCTGGCAAAATGGAGGAAAACCTCATCATGA 1092 0.3947 MSYMFLLFVTFKIIKKKLTKIQEAMGFQTSHSTKKIALPIFKANEDSSDAHEHSLIQRALNLTDQTLTNTKFITSGYDSWMVRHPSALHSFNRLMEEAIGKRIVLFLDYDGTLSPIVNDPDRAFMSDEMRAAVCEVATYFPTAIISGRSRDKVKDFVKLNNLYYAGSHGMDIMAPSMPDGSSDCDTALKTNGNEVPFQPAKKFLPAVREILRRLENGVKEIEGAKVEDNRFCISVHFRHVQEKDYGILEEKVKSVLENNPQFCLTEGKKVMEIRPSIEWNKGNAVEYFLDTLGLSSSSNILPVYIGDDRTDEDAFKVIQRGGQGYPIIVTSIQRETNALYSLRDPSEVLIFLSKLAKWRKTSS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1787g00011 363 FunFam Trehalose 6-phosphate phosphatase 200 276 - -
Gabi1787g00011 363 NCBIfam trehalose-phosphatase 101 356 IPR003337 GO:0003824|GO:0005992
Gabi1787g00011 363 CDD HAD_TPP 104 348 - -
Gabi1787g00011 363 NCBIfam HAD-IIB family hydrolase 105 320 IPR006379 -
Gabi1787g00011 363 Gene3D - 183 363 IPR023214 -
Gabi1787g00011 363 Gene3D - 103 178 IPR023214 -
Gabi1787g00011 363 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 43 362 IPR044651 GO:0004805|GO:0005992
Gabi1787g00011 363 FunFam Trehalose 6-phosphate phosphatase 205 363 - -
Gabi1787g00011 363 SUPERFAMILY HAD-like 104 359 IPR036412 -
Gabi1787g00011 363 Pfam Trehalose-phosphatase 106 346 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1787g00011 Gabi-Chr1787 55429 60740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1787g00011 90 356 Trehalose Biosynthesis Gene Families AT1G70290 27.491 2.17e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1787g00011 K01087 - gmx:100809194 562.762