Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1785g00005 ATGCGTCGTAATAATATCGAAGATAGGTTACTCTCTTGGAGATCCAAGCTCCTGCGATCGTTTAGGGCCCTGTTGGGTTGTGGGCCATCTTTTGGTCCAAGACCGTTGGATCAGGGAGGTAAAGCTTCAAGCTCTTCCGGTCTGAACTCGTTGGATCAGGGTTTCAATAGCATCCAAAGCAGCACGTCATCTCCGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGATTATGCTTCTTCAACATGGTGTTTGGATGAAATGGCTTCTATAAATGCATGCCGTAAAAATTTGAAACAAACTGTTTTCCCAATTTTCTATGATGTGGATCCATCTCATGTACGAAAACAGAATGGGGTGTACGAGGATGCCTTTCTCTTACACACTAAGAGATTTGAACAAGATGAAGCCAAGGTTGATCGATGGGAGGAAGCTATGTCGGATTTGGCAGGATTAGCTGGTTGGGATGTCAGGAATAAGCCAGAGTTTGAAGAAATTGAAAAAATTCTCCGCGAGGTAATAAAAACATTGGGTCATAAATTCTCAGGGTTTATGCATGATGTTATTGGGATACAACCTCATGTAGCAACATTAGAAAGCTTTTTAAAATTAAGCTCAGAGGAGGATAATTTTCGAGTTTTGGGAATTTGGGGGATGAGTGGAATAGGAAAAACAACTCTTGCTACTGTCTTGTATGACAGAATCTCTTATCAGTTTGACTTCTGCTGTTTTATTGAGGATGTAAGCAAAATTTATAGAGATGGTGGTGCTACTGATTTGCAGAAACATATTCTTCGTCAAACTCTAAAAGAAGAAGATCTAGACAAATACGATCCTCTTGAAATATCCGGAATTGTAACAGATAGGCTACACAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTAATCAATTAAAGCAATTACAGGAATTAGCTATAAATCCTAAATTGCTTCGCGCAGGAAGTAGAATGATTGTAGCCACTGAAGATGAACATATTCTTAAAGCGTATGGAGCAGATAAAGTTTATAAGGCTCAATTGATGAATGATAACGACGCTTGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAGCAGCAATTTTGTAGAGCTGATCCCTGAGATAGTAAAATATGCTAAAGGCCTTCCATTAGTAATTAGTGTAGTGGGTTCTTTTTTGTGTACCCGAGATGCTCCCCACTGGATAGACGCCTTGGATAGATTGAAGAATAATCCAGACAAAGATATTATGGATGTGCTTCGTTTAAGTTTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTACACATTGCTTGTTTCTTTAAAGGGGAGGGAGTGGATTATGTAAAACGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATACAACGTCTCATTGAGACATCACTCATAATCATTAAAAATGAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGAAAGCATATTGTTCGGCAACAATTTCCCCAAGAACCAGGATCATGGAGTAGATTGTGGCGTTACCTGGATTTCCATCATGTCTCGATGACAAAAACGGGAACAGACAAGGTTAAAGCTATAGTTCTAGATCAAAAAGATGTTTCCGAATGTCCTCAGGCGATTGCAGGTGCGAGTGCGGAAGGATTGTCGAAGATGACAAGCCTTAGATTGCTCATATTAAATCATATGAATTTTTCAGGAGACCTCAATTTTCTTCCTAACAGCCTGCAATGTCTTATGTGGCGCGATTACCCTTTCACTTCTTTGCCATCCAATTTTGAGCCCTATGGTCTTGTTGAATTGAATATGCGTAATAGCAGCATCCAACGATTGTGGGACGGCCGCAAGGATCTTCCCTTTTTAAAAAGGATAGATTTGAGCAACTCTAAAGATCTTATGGAAACTCCAATCTTTGATGGGACCCCAAATCTTGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCCATCAATCAATTGGAATTTTGAGTAAACTTGTTTTCTTGAGTTTGCAAAACTGTAGCAGTCTGGTTGTCTTTGATTTTGGCTGTTACACTAATTTAAGTTCTCTGAAAGTTCTGGACCTCTCTGGTTGCGCAAAACTTGAAAAAATGCCAGATTTTACAAGGGCATTGAATCTCGAGTACCTTGATATTGATCAATGTACTAGCTTATCTACGGTTCATCCATCAATTGGGACTCGTACAAAGCTTAGATTCTTAAGTTGCAGAGACTGCACTAGTCTTGTGAGTATACCCTATCAGGTTTACACCATGCAATCTCTTATAACTCTAGATTTCCATGGCTGCTTTGAACTTAGAAAACTACCCCCAAGGTGGTCTTTATATTTTTCTACGAACTTTCCAGCTTTGATTCTTCTAGATTTAGGCTTTTGCAATCTAAGTGAAATACCCGTTTGTATTGGAGAGGTGAAGTGTTTAGAAAGACTAAATCTAGAGGGAAACAACTTTGTTTCATTACCTTCTACCATCGGGAGGCTTGAAAGGCTAGCATATTTAAACTTGGCGCATTGCCATGAGCTTCAATCTTTACGTGAGCTTCCGTATCCGCAGGCAAGTGATTCATCAGTGGGAAGGTATTTTGAAACGGCATCCGGATCCCGTGATCATAGGTCTGGATTATATATTTTTGATTGCCCCAAGCTGGCTGCTGCTAGGTTCTGGGAGACTGCATTTCGGTGGCTTGAAAGACTAATTGAGGAACCCCGACACTTCCGGTGTGGCTTTGACATTGTTATTCCTTGGGATTGGAAAATTATTGATTCTTCATCAAATCGTATTCTTCCTAGGTGGTTCAGACATCAATTTAACGAGGCTTGGTGGTTCAGACATCAATTTAACGAGGCTTCAGTAAAAAGGATAGAAGGTTTTGATGTGAATGACAACTGGAATGGTTTTGCCTTCTGTGTAGCATTTGAGATAAACAATCATATTGCGATGTCTGGTTCACCAGATTGGTTCTCCTTGTCACGACCACATCCTTTTTATCTTTCTTTTGAAAGTGAATTCACGGAAGAATGCTTTGATATGCCACTCAGTTTGGAACTGAACAAGATTGTTGGATCAAAATATCTTTGGATAATCTATATCTCTCGAGAGCATTGCCATTTTGTGAAAACAGGAGCGCGTATCACATTTAAAGCCCGCCCAGGTCTCATGATGAAAGAATGGGGGTTACGCATGGTAGTCGAGGAAGACGCGGATGCAGAAGAAGTCCCCTTTGTCATTAATAATGTAAAAGAAAGCAGCTTGTGTCCTGAAATCCAGCTTCCCTACAATTGGTTGGTTACTAAGGAAGAGGAAGACGAGAATCGTGGAGCCAAGGGCAAAGAAAATACAGCCTTCCTTCACTTAGGTCAGCCGTAG 3417 0.4006 MRRNNIEDRLLSWRSKLLRSFRALLGCGPSFGPRPLDQGGKASSSSGLNSLDQGFNSIQSSTSSPRICKYDVFISFRDYASSTWCLDEMASINACRKNLKQTVFPIFYDVDPSHVRKQNGVYEDAFLLHTKRFEQDEAKVDRWEEAMSDLAGLAGWDVRNKPEFEEIEKILREVIKTLGHKFSGFMHDVIGIQPHVATLESFLKLSSEEDNFRVLGIWGMSGIGKTTLATVLYDRISYQFDFCCFIEDVSKIYRDGGATDLQKHILRQTLKEEDLDKYDPLEISGIVTDRLHKIKVLVVLDNVNQLKQLQELAINPKLLRAGSRMIVATEDEHILKAYGADKVYKAQLMNDNDACQLLCRKAFKSDDSSSNFVELIPEIVKYAKGLPLVISVVGSFLCTRDAPHWIDALDRLKNNPDKDIMDVLRLSFDGLQHEEKEIFLHIACFFKGEGVDYVKRILDACGLHPHIGIQRLIETSLIIIKNEKIHMHEMLQELGKHIVRQQFPQEPGSWSRLWRYLDFHHVSMTKTGTDKVKAIVLDQKDVSECPQAIAGASAEGLSKMTSLRLLILNHMNFSGDLNFLPNSLQCLMWRDYPFTSLPSNFEPYGLVELNMRNSSIQRLWDGRKDLPFLKRIDLSNSKDLMETPIFDGTPNLERLDLTGCTNLHHVHQSIGILSKLVFLSLQNCSSLVVFDFGCYTNLSSLKVLDLSGCAKLEKMPDFTRALNLEYLDIDQCTSLSTVHPSIGTRTKLRFLSCRDCTSLVSIPYQVYTMQSLITLDFHGCFELRKLPPRWSLYFSTNFPALILLDLGFCNLSEIPVCIGEVKCLERLNLEGNNFVSLPSTIGRLERLAYLNLAHCHELQSLRELPYPQASDSSVGRYFETASGSRDHRSGLYIFDCPKLAAARFWETAFRWLERLIEEPRHFRCGFDIVIPWDWKIIDSSSNRILPRWFRHQFNEAWWFRHQFNEASVKRIEGFDVNDNWNGFAFCVAFEINNHIAMSGSPDWFSLSRPHPFYLSFESEFTEECFDMPLSLELNKIVGSKYLWIIYISREHCHFVKTGARITFKARPGLMMKEWGLRMVVEEDADAEEVPFVINNVKESSLCPEIQLPYNWLVTKEEEDENRGAKGKENTAFLHLGQP 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1785g00005 1138 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 698 873 IPR044974 GO:0006952
Gabi1785g00005 1138 Gene3D - 349 432 IPR042197 -
Gabi1785g00005 1138 SUPERFAMILY "Winged helix" DNA-binding domain 419 520 IPR036390 -
Gabi1785g00005 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 442 IPR027417 -
Gabi1785g00005 1138 Pfam Leucine Rich Repeat 606 622 IPR011713 -
Gabi1785g00005 1138 Gene3D Ribonuclease Inhibitor 793 872 IPR032675 -
Gabi1785g00005 1138 Gene3D Ribonuclease Inhibitor 692 792 IPR032675 -
Gabi1785g00005 1138 ProSiteProfiles TIR domain profile. 1 178 IPR000157 GO:0007165
Gabi1785g00005 1138 Gene3D - 66 184 IPR035897 -
Gabi1785g00005 1138 SUPERFAMILY Toll/Interleukin receptor TIR domain 67 156 IPR035897 -
Gabi1785g00005 1138 Gene3D Ribonuclease Inhibitor 514 691 IPR032675 -
Gabi1785g00005 1138 Pfam TIR domain 68 180 IPR000157 GO:0007165
Gabi1785g00005 1138 Pfam NB-ARC domain 205 416 IPR002182 GO:0043531
Gabi1785g00005 1138 SUPERFAMILY L domain-like 502 862 - -
Gabi1785g00005 1138 Gene3D - 185 343 IPR027417 -
Gabi1785g00005 1138 PRINTS Disease resistance protein signature 383 397 - -
Gabi1785g00005 1138 PRINTS Disease resistance protein signature 696 712 - -
Gabi1785g00005 1138 PRINTS Disease resistance protein signature 214 229 - -
Gabi1785g00005 1138 PRINTS Disease resistance protein signature 290 304 - -
Gabi1785g00005 1138 SMART till_3 29 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1785g00005 Gabi-Chr1785 19559 26834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1785g00005 694 859 WRKY Transcription Factor Family AT4G12020 35.503 5.60e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1785g00005 - - vvo:131643801 1200.65