Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1785g00004 ATGCGTCGTAATAATATCGAAGATAGGTTACTCTCTTGGAGATCCAAGCTCCTGCGATCGTTTAGGGCCCTGTTGGGTTGTGGGCCATCTTTTGGTCCAAGACCGTTGGATCAGGGAGGTAAAGCTTCAAGCTCTTCCGGTCTGAACTCGTTGGATCAGGGTTTCAATAGCATCCAAAGCAGCACGTCATCTCCGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGTAGTGATACTCGCAACTCTTTTGTTGACCATCTTTTTGCTCATCTCTCCAGGAAAGGTCTTTTTGCCTTTAAGGATGACAAACGGCTCGGGAAAGGAGAACCCATTAAATCACAGCTTTTACAAGCAATTGAAGATTCACGGGTTTCTATCGTTGTCTTTTCCCCAGATTATGCTTCTTCAACATGGTGTTTGGATGAAATGGCTTCTATAAATGCATGCCGTAAAAATTTGAAACAAACTGTTTTCCCAATTTTCTATGATGTGGATCCATCTCATGTACGAAAACAGAATGGGGTGTACGAGGATGCCTTTCTCTTACACACTAAGAGATTTGAACAAGATGAAGCCAAGGTTGATCGATGGGAGGAAGCTATGTCGGATTTGGCAGGATTAGCTGGTTGGGATGTCAGGAATAAGCCAGAGTTTGAAGAAATTGAAAAAATTCTCCGCGAGAAACATATTCTTCGTCAAACTCTAAAAGAAGAAGATCTAGACAAATACGATCCTCTTGAAATATCCGGAATTGTAACAGATAGGCTACACAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTAATCAATTAAAGCAATTACAGGAATTAGCTATAAATCCTAAATTGCTTCGCGCAGGAAGTAGAATGATTGTAGCCACTGAAGATGAACATATTCTTAAAGCGTATGGAGCAGATAAAGTTTATAAGGCTCAATTGATGAATGATAACGACGCTTGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAGCAGCAATTTTGTAGAGCTGATCCCTGAGATAGTAAAATATGCTAAAGGCCTTCCATTAGTAATTAGTGTAGTGGGTTCTTTTTTGTGTACCCGAGATGCTCCCCACTGGATAGACGCCTTGGATAGATTGAAGAATAATCCAGACAAAGATATTATGGATGTGCTTCGTTTAAGTTTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTACACATTGCTTGTTTCTTTAAAGGGGAGGGAGTGGATTATGTAAAACGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATACAACGTCTCATTGAGACATCACTCATAATCATTAAAAATGAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGAAAGCATATTGTTCGGCAACAATTTCCCCAAGAACCAGGATCATGGAGTAGATTGTGGCGTTACCTGGATTTCCATCATGTCTCGATGACAAAAACGGGAACAGACAAGGTTAAAGCTATAGTTCTAGATCAAAAAGATGTTTCCGAATGTCCTCAGGCGATTGCAGGTGCGAGTGCGGAAGGATTGTCGAAGATGACAAGCCTTAGATTGCTCATATTAAATCATATGAATTTTTCAGGAGACCTCAATTTTCTTCCTAACAGCCTGCAATGTCTTATGTGGCGCGATTACCCTTTCACTTCTTTGCCATCCAATTTTGAGCCCTATGGTCTTGTTGAATTGAATATGCGTAATAGCAGCATCCAACGATTGTGGGACGGCCGCAAGGATCTTCCCTTTTTAAAAAGGATAGATTTGAGCAACTCTAAAGATCTTATGGAAACTCCAATCTTTGATGGGACCCCAAATCTTGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCCATCAATCAATTGGAATTTTGAGTAAACTTGTTTTCTTGAGTTTGCAAAACTGTAGCAGTCTGGTTGTCTTTGATTTTGGCTGTTACACTAATTTAAGTTCTCTGAAAGTTCTGGACCTCTCTGGTTGCGCAAAACTTGAAAAAATGCCAGATTTTACAAGGGCATTGAATCTCGAGTACCTTGATATTGATCAATGTACTAGCTTATCTACGGTTCATCCATCAATTGGGACTCGTACAAAGCTTAGATTCTTAAGTTGCAGAGACTGCACTAGTCTTGTGAGTATACCCTATCAGGTTTACACCATGCAATCTCTTATAACTCTAGATTTCCATGGCTGCTTTGAACTTAGAAAACTACCCCCAAGGTGGTCTTTATATTTTTCTACGAACTTTCCAGCTTTGATTCTTCTAGATTTAGGCTTTTGCAATCTAAGTGAAATACCCGTTTGTATTGGAGAGGTGAAGTGTTTAGAAAGACTAAATCTAGAGGGAAACAACTTTGTTTCATTACCTTCTACCATCGGGAGGCTTGAAAGGCTAGCATATTTAAACTTGGCGCATTGCCATGAGCTTCAATCTTTACGTGAGCTTCCGTATCCGCAGGCAAGTGATTCATCAGTGGGAAGGTATTTTGAAACGGCATCCGGATCCCGTGATCATAGGTCTGGATTATATATTTTTGATTGCCCCAAGCTGGCTGCTGCTAGGTTCTGGGAGACTGCATTTCGGTGGCTTGAAAGACTAATTGAGGAACCCCGACACTTCCGGTGTGGCTTTGACATTGTTATTCCTTGGGATTGGAAAATTATTGATTCTTCATCAAATCGTATTCTTCCTAGGTGGTTCAGACATCAATTTAACGAGGCTTGGTGGTTCAGACATCAATTTAACGAGGCTTCAGTAAAAAGGATAGAAGGTTTTGATGTGAATGACAACTGGAATGGTTTTGCCTTCTGTGTAGCATTTGAGATAAACAATCATATTGCGATGTCTGGTTCACCAGATTGGTTCTCCTTGTCACGACCACATCCTTTTTATCTTTCTTTTGAAAGTGAATTCACGGAAGAATGCTTTGATATGCCACTCAGTTTGGAACTGAACAAGATTGTTGGATCAAAATATCTTTGGATAATCTATATCTCTCGAGAGCATTGCCATTTTGTGAAAACAGGAGCGCGTATCACATTTAAAGCCCGCCCAGGTCTCATGATGAAAGAATGGGGGTTACGCATGGTAGTCGAGGAAGACGCGGATGCAGAAGAAGTCCCCTTTGTCATTAATAATGTAAAAGAAAGCAGCTTGTGTCCTGAAATCCAGCTTCCCTACAATTGGTTGGTTACTAAGGAAGAGGAAGACGAGAATCGTGGAGCCAAGGGCAAAGAAAATACAGCCTTCCTTCACTTAGGTCAGCCGTAG 3318 0.4054 MRRNNIEDRLLSWRSKLLRSFRALLGCGPSFGPRPLDQGGKASSSSGLNSLDQGFNSIQSSTSSPRICKYDVFISFRGSDTRNSFVDHLFAHLSRKGLFAFKDDKRLGKGEPIKSQLLQAIEDSRVSIVVFSPDYASSTWCLDEMASINACRKNLKQTVFPIFYDVDPSHVRKQNGVYEDAFLLHTKRFEQDEAKVDRWEEAMSDLAGLAGWDVRNKPEFEEIEKILREKHILRQTLKEEDLDKYDPLEISGIVTDRLHKIKVLVVLDNVNQLKQLQELAINPKLLRAGSRMIVATEDEHILKAYGADKVYKAQLMNDNDACQLLCRKAFKSDDSSSNFVELIPEIVKYAKGLPLVISVVGSFLCTRDAPHWIDALDRLKNNPDKDIMDVLRLSFDGLQHEEKEIFLHIACFFKGEGVDYVKRILDACGLHPHIGIQRLIETSLIIIKNEKIHMHEMLQELGKHIVRQQFPQEPGSWSRLWRYLDFHHVSMTKTGTDKVKAIVLDQKDVSECPQAIAGASAEGLSKMTSLRLLILNHMNFSGDLNFLPNSLQCLMWRDYPFTSLPSNFEPYGLVELNMRNSSIQRLWDGRKDLPFLKRIDLSNSKDLMETPIFDGTPNLERLDLTGCTNLHHVHQSIGILSKLVFLSLQNCSSLVVFDFGCYTNLSSLKVLDLSGCAKLEKMPDFTRALNLEYLDIDQCTSLSTVHPSIGTRTKLRFLSCRDCTSLVSIPYQVYTMQSLITLDFHGCFELRKLPPRWSLYFSTNFPALILLDLGFCNLSEIPVCIGEVKCLERLNLEGNNFVSLPSTIGRLERLAYLNLAHCHELQSLRELPYPQASDSSVGRYFETASGSRDHRSGLYIFDCPKLAAARFWETAFRWLERLIEEPRHFRCGFDIVIPWDWKIIDSSSNRILPRWFRHQFNEAWWFRHQFNEASVKRIEGFDVNDNWNGFAFCVAFEINNHIAMSGSPDWFSLSRPHPFYLSFESEFTEECFDMPLSLELNKIVGSKYLWIIYISREHCHFVKTGARITFKARPGLMMKEWGLRMVVEEDADAEEVPFVINNVKESSLCPEIQLPYNWLVTKEEEDENRGAKGKENTAFLHLGQP 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1785g00004 1105 Gene3D Ribonuclease Inhibitor 761 842 IPR032675 -
Gabi1785g00004 1105 Gene3D Ribonuclease Inhibitor 659 760 IPR032675 -
Gabi1785g00004 1105 PRINTS Disease resistance protein signature 663 679 - -
Gabi1785g00004 1105 PRINTS Disease resistance protein signature 257 271 - -
Gabi1785g00004 1105 PRINTS Disease resistance protein signature 350 364 - -
Gabi1785g00004 1105 SMART till_3 69 209 IPR000157 GO:0007165
Gabi1785g00004 1105 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 665 831 IPR044974 GO:0006952
Gabi1785g00004 1105 Pfam TIR domain 69 226 IPR000157 GO:0007165
Gabi1785g00004 1105 ProSiteProfiles TIR domain profile. 68 231 IPR000157 GO:0007165
Gabi1785g00004 1105 Pfam Leucine Rich Repeat 573 589 IPR011713 -
Gabi1785g00004 1105 SUPERFAMILY Toll/Interleukin receptor TIR domain 60 212 IPR035897 -
Gabi1785g00004 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 409 IPR027417 -
Gabi1785g00004 1105 SUPERFAMILY L domain-like 469 829 - -
Gabi1785g00004 1105 SUPERFAMILY "Winged helix" DNA-binding domain 386 487 IPR036390 -
Gabi1785g00004 1105 Gene3D Ribonuclease Inhibitor 489 658 IPR032675 -
Gabi1785g00004 1105 Gene3D - 316 399 IPR042197 -
Gabi1785g00004 1105 FunFam Disease resistance protein (TIR-NBS-LRR class) 66 235 - -
Gabi1785g00004 1105 Pfam NB-ARC domain 231 383 IPR002182 GO:0043531
Gabi1785g00004 1105 Gene3D - 67 241 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1785g00004 Gabi-Chr1785 19559 26834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1785g00004 220 825 WRKY Transcription Factor Family AT5G45050 28.814 9.70e-67 244