Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1785g00003 ATGCGTCGTAATAATATCGAAGATAGGTTACTCTCTTGGAGATCCAAGCTCCTGCGATCGTTTAGGGCCCTGTTGGGTTGTGGGCCATCTTTTGGTCCAAGACCGTTGGATCAGGGAGGTAAAGCTTCAAGCTCTTCCGGTCTGAACTCGTTGGATCAGGGTTTCAATAGCATCCAAAGCAGCACGTCATCTCCGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGTAGTGATACTCGCAACTCTTTTGTTGACCATCTTTTTGCTCATCTCTCCAGGAAAGGTCTTTTTGCCTTTAAGGATGACAAACGGCTCGGGAAAGGAGAACCCATTAAATCACAGCTTTTACAAGCAATTGAAGATTCACGGGTTTCTATCGTTGTCTTTTCCCCAGATTATGCTTCTTCAACATGGTGTTTGGATGAAATGGCTTCTATAAATGCATGCCGTAAAAATTTGAAACAAACTGTTTTCCCAATTTTCTATGATGTGGATCCATCTCATGTACGAAAACAGAATGGGGTGTACGAGGATGCCTTTCTCTTACACACTAAGAGATTTGAACAAGATGAAGCCAAGGTTGATCGATGGGAGGAAGCTATGTCGGATTTGGCAGGATTAGCTGGTTGGGATGTCAGGAATAAGCCAGAGTTTGAAGAAATTGAAAAAATTCTCCGCGAGGTAATAAAAACATTGGGTCATAAATTCTCAGGGTTTATGCATGATGTTATTGGGATACAACCTCATGTAGCAACATTAGAAAGCTTTTTAAAATTAAGCTCAGAGGAGGATAATTTTCGAGTTTTGGGAATTTGGGGGATGAGTGGAATAGGAAAAACAACTCTTGCTACTGTCTTGTATGACAGAATCTCTTATCAGTTTGACTTCTGCTGTTTTATTGAGGATGTAAGCAAAATTTATAGAGATGGTGGTGCTACTGATTTGCAGAAACATATTCTTCGTCAAACTCTAAAAGAAGAAGATCTAGACAAATACGATCCTCTTGAAATATCCGGAATTGTAACAGATAGGCTACACAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTAATCAATTAAAGCAATTACAGGAATTAGCTATAAATCCTAAATTGCTTCGCGCAGGAAGTAGAATGATTGTAGCCACTGAAGATGAACATATTCTTAAAGCGTATGGAGCAGATAAAGTTTATAAGGCTCAATTGATGAATGATAACGACGCTTGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAGCAGCAATTTTGTAGAGCTGATCCCTGAGATAGTAAAATATGCTAAAGGCCTTCCATTAGTAATTAGTGTAGTGGGTTCTTTTTTGTGTACCCGAGATGCTCCCCACTGGATAGACGCCTTGGATAGATTGAAGAATAATCCAGACAAAGATATTATGGATGTGCTTCGTTTAAGTTTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTACACATTGCTTGTTTCTTTAAAGGGGAGGGAGTGGATTATGTAAAACGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATACAACGTCTCATTGAGACATCACTCATAATCATTAAAAATGAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGAAAGCATATTGTTCGGCAACAATTTCCCCAAGAACCAGGATCATGGAGTAGATTGTGGCGTTACCTGGATTTCCATCATGTCTCGATGACAAAAACGGGAACAGACAAGGTTAAAGCTATAGTTCTAGATCAAAAAGATGTTTCCGAATGTCCTCAGGCGATTGCAGGTGCGAGTGCGGAAGGATTGTCGAAGATGACAAGCCTTAGATTGCTCATATTAAATCATATGAATTTTTCAGGAGACCTCAATTTTCTTCCTAACAGCCTGCAATGTCTTATGTGGCGCGATTACCCTTTCACTTCTTTGCCATCCAATTTTGAGCCCTATGGTCTTGTTGAATTGAATATGCGTAATAGCAGCATCCAACGATTGTGGGACGGCCGCAAGGATCTTCCCTTTTTAAAAAGGATAGATTTGAGCAACTCTAAAGATCTTATGGAAACTCCAATCTTTGATGGGACCCCAAATCTTGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCCATCAATCAATTGGAATTTTGAGTAAACTTGTTTTCTTGAGTTTGCAAAACTGTAGCAGTCTGGTTGTCTTTGATTTTGGCTGTTACACTAATTTAAGTTCTCTGAAAGTTCTGGACCTCTCTGGTTGCGCAAAACTTGAAAAAATGCCAGATTTTACAAGGGCATTGAATCTCGAGTACCTTGATATTGATCAATGTACTAGCTTATCTACGGTTCATCCATCAATTGGGACTCGTACAAAGCTTAGATTCTTAAGTTGCAGAGACTGCACTAGTCTTGCAAGTGATTCATCAGTGGGAAGGTATTTTGAAACGGCATCCGGATCCCGTGATCATAGGTCTGGATTATATATTTTTGATTGCCCCAAGCTGGCTGCTGCTAGGTTCTGGGAGACTGCATTTCGGTGGCTTGAAAGACTAATTGAGGAACCCCGACACTTCCGGTGTGGCTTTGACATTGTTATTCCTTGGGATTGGAAAATTATTGATTCTTCATCAAATCGTATTCTTCCTAGGTGGTTCAGACATCAATTTAACGAGGCTTGGTGGTTCAGACATCAATTTAACGAGGCTTCAGTAAAAAGGATAGAAGGTTTTGATGTGAATGACAACTGGAATGGTTTTGCCTTCTGTGTAGCATTTGAGATAAACAATCATATTGCGATGTCTGGTTCACCAGATTGGTTCTCCTTGTCACGACCACATCCTTTTTATCTTTCTTTTGAAAGTGAATTCACGGAAGAATGCTTTGATATGCCACTCAGTTTGGAACTGAACAAGATTGTTGGATCAAAATATCTTTGGATAATCTATATCTCTCGAGAGCATTGCCATTTTGTGAAAACAGGAGCGCGTATCACATTTAAAGCCCGCCCAGGTCTCATGATGAAAGAATGGGGGTTACGCATGGTAGTCGAGGAAGACGCGGATGCAGAAGAAGTCCCCTTTGTCATTAATAATGTAAAAGAAAGCAGCTTGTGTCCTGAAATCCAGCTTCCCTACAATTGGTTGGTTACTAAGGAAGAGGAAGACGAGAATCGTGGAGCCAAGGGCAAAGAAAATACAGCCTTCCTTCACTTAGGTCAGCCGTAG 3258 0.4021 MRRNNIEDRLLSWRSKLLRSFRALLGCGPSFGPRPLDQGGKASSSSGLNSLDQGFNSIQSSTSSPRICKYDVFISFRGSDTRNSFVDHLFAHLSRKGLFAFKDDKRLGKGEPIKSQLLQAIEDSRVSIVVFSPDYASSTWCLDEMASINACRKNLKQTVFPIFYDVDPSHVRKQNGVYEDAFLLHTKRFEQDEAKVDRWEEAMSDLAGLAGWDVRNKPEFEEIEKILREVIKTLGHKFSGFMHDVIGIQPHVATLESFLKLSSEEDNFRVLGIWGMSGIGKTTLATVLYDRISYQFDFCCFIEDVSKIYRDGGATDLQKHILRQTLKEEDLDKYDPLEISGIVTDRLHKIKVLVVLDNVNQLKQLQELAINPKLLRAGSRMIVATEDEHILKAYGADKVYKAQLMNDNDACQLLCRKAFKSDDSSSNFVELIPEIVKYAKGLPLVISVVGSFLCTRDAPHWIDALDRLKNNPDKDIMDVLRLSFDGLQHEEKEIFLHIACFFKGEGVDYVKRILDACGLHPHIGIQRLIETSLIIIKNEKIHMHEMLQELGKHIVRQQFPQEPGSWSRLWRYLDFHHVSMTKTGTDKVKAIVLDQKDVSECPQAIAGASAEGLSKMTSLRLLILNHMNFSGDLNFLPNSLQCLMWRDYPFTSLPSNFEPYGLVELNMRNSSIQRLWDGRKDLPFLKRIDLSNSKDLMETPIFDGTPNLERLDLTGCTNLHHVHQSIGILSKLVFLSLQNCSSLVVFDFGCYTNLSSLKVLDLSGCAKLEKMPDFTRALNLEYLDIDQCTSLSTVHPSIGTRTKLRFLSCRDCTSLASDSSVGRYFETASGSRDHRSGLYIFDCPKLAAARFWETAFRWLERLIEEPRHFRCGFDIVIPWDWKIIDSSSNRILPRWFRHQFNEAWWFRHQFNEASVKRIEGFDVNDNWNGFAFCVAFEINNHIAMSGSPDWFSLSRPHPFYLSFESEFTEECFDMPLSLELNKIVGSKYLWIIYISREHCHFVKTGARITFKARPGLMMKEWGLRMVVEEDADAEEVPFVINNVKESSLCPEIQLPYNWLVTKEEEDENRGAKGKENTAFLHLGQP 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1785g00003 1085 SMART till_3 69 209 IPR000157 GO:0007165
Gabi1785g00003 1085 ProSiteProfiles TIR domain profile. 68 234 IPR000157 GO:0007165
Gabi1785g00003 1085 SUPERFAMILY "Winged helix" DNA-binding domain 475 576 IPR036390 -
Gabi1785g00003 1085 SUPERFAMILY L domain-like 558 817 - -
Gabi1785g00003 1085 Gene3D - 241 399 IPR027417 -
Gabi1785g00003 1085 SUPERFAMILY Toll/Interleukin receptor TIR domain 60 212 IPR035897 -
Gabi1785g00003 1085 Pfam NB-ARC domain 261 472 IPR002182 GO:0043531
Gabi1785g00003 1085 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 70 743 IPR044974 GO:0006952
Gabi1785g00003 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 498 IPR027417 -
Gabi1785g00003 1085 Gene3D - 67 240 IPR035897 -
Gabi1785g00003 1085 FunFam Disease resistance protein (TIR-NBS-LRR class) 66 236 - -
Gabi1785g00003 1085 Pfam TIR domain 69 236 IPR000157 GO:0007165
Gabi1785g00003 1085 Pfam Leucine Rich Repeat 662 678 IPR011713 -
Gabi1785g00003 1085 Gene3D - 405 488 IPR042197 -
Gabi1785g00003 1085 PRINTS Disease resistance protein signature 346 360 - -
Gabi1785g00003 1085 PRINTS Disease resistance protein signature 270 285 - -
Gabi1785g00003 1085 PRINTS Disease resistance protein signature 439 453 - -
Gabi1785g00003 1085 PRINTS Disease resistance protein signature 752 768 - -
Gabi1785g00003 1085 Gene3D Ribonuclease Inhibitor 552 748 IPR032675 -
Gabi1785g00003 1085 Gene3D Ribonuclease Inhibitor 749 829 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1785g00003 Gabi-Chr1785 19559 26834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1785g00003 44 815 WRKY Transcription Factor Family AT4G12020 29.976 9.96e-85 300