Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1785g00002 ATGCGTCGTAATAATATCGAAGATAGGTTACTCTCTTGGAGATCCAAGCTCCTGCGATCGTTTAGGGCCCTGTTGGGTTGTGGGCCATCTTTTGGTCCAAGACCGTTGGATCAGGGAGGTAAAGCTTCAAGCTCTTCCGGTCTGAACTCGTTGGATCAGGGTTTCAATAGCATCCAAAGCAGCACGTCATCTCCGCGGATCTGTAAATACGATGTGTTTATCAGTTTCAGAGGTAGTGATACTCGCAACTCTTTTGTTGACCATCTTTTTGCTCATCTCTCCAGGAAAGGTCTTTTTGCCTTTAAGGATGACAAACGGCTCGGGAAAGGAGAACCCATTAAATCACAGCTTTTACAAGCAATTGAAGATTCACGGGTTTCTATCGTTGTCTTTTCCCCAGATTATGCTTCTTCAACATGGTGTTTGGATGAAATGGCTTCTATAAATGCATGCCGTAAAAATTTGAAACAAACTGTTTTCCCAATTTTCTATGATGTGGATCCATCTCATGTACGAAAACAGAATGGGGTGTACGAGGATGCCTTTCTCTTACACACTAAGAGATTTGAACAAGATGAAGCCAAGGTTGATCGATGGGAGGAAGCTATGTCGGATTTGGCAGGATTAGCTGGTTGGGATGTCAGGAATAAGCCAGAGTTTGAAGAAATTGAAAAAATTCTCCGCGAGGTAATAAAAACATTGGGTCATAAATTCTCAGGGTTTATGCATGATGTTATTGGGATACAACCTCATGTAGCAACATTAGAAAGCTTTTTAAAATTAAGCTCAGAGGAGGATAATTTTCGAGTTTTGGGAATTTGGGGGATGAGTGGAATAGGAAAAACAACTCTTGCTACTGTCTTGTATGACAGAATCTCTTATCAGTTTGACTTCTGCTGTTTTATTGAGGATGTAAGCAAAATTTATAGAGATGGTGGTGCTACTGATTTGCAGAAACATATTCTTCGTCAAACTCTAAAAGAAGAAGATCTAGACAAATACGATCCTCTTGAAATATCCGGAATTGTAACAGATAGGCTACACAAGATAAAGGTCCTTGTAGTTCTTGACAATGTTAATCAATTAAAGCAATTACAGGAATTAGCTATAAATCCTAAATTGCTTCGCGCAGGAAGTAGAATGATTGTAGCCACTGAAGATGAACATATTCTTAAAGCGTATGGAGCAGATAAAGTTTATAAGGCTCAATTGATGAATGATAACGACGCTTGTCAACTTTTATGCAGAAAAGCCTTCAAAAGTGATGATTCAAGCAGCAATTTTGTAGAGCTGATCCCTGAGATAGTAAAATATGCTAAAGGCCTTCCATTAGTAATTAGTGTAGTGGGTTCTTTTTTGTGTACCCGAGATGCTCCCCACTGGATAGACGCCTTGGATAGATTGAAGAATAATCCAGACAAAGATATTATGGATGTGCTTCGTTTAAGTTTTGATGGACTACAACATGAGGAGAAGGAAATATTTCTACACATTGCTTGTTTCTTTAAAGGGGAGGGAGTGGATTATGTAAAACGAATTCTAGATGCTTGTGGATTACACCCTCACATTGGAATACAACGTCTCATTGAGACATCACTCATAATCATTAAAAATGAGAAAATTCATATGCATGAAATGTTGCAAGAATTGGGAAAGCATATTGTTCGGCAACAATTTCCCCAAGAACCAGGATCATGGAGTAGATTGTGGCGTTACCTGGATTTCCATCATGTCTCGATGACAAAAACGGGAACAGACAAGGTTAAAGCTATAGTTCTAGATCAAAAAGATGTTTCCGAATGTCCTCAGGCGATTGCAGGTGCGAGTGCGGAAGGATTGTCGAAGATGACAAGCCTTAGATTGCTCATATTAAATCATATGAATTTTTCAGGAGACCTCAATTTTCTTCCTAACAGCCTGCAATGTCTTATGTGGCGCGATTACCCTTTCACTTCTTTGCCATCCAATTTTGAGCCCTATGGTCTTGTTGAATTGAATATGCGTAATAGCAGCATCCAACGATTGTGGGACGGCCGCAAGGATCTTCCCTTTTTAAAAAGGATAGATTTGAGCAACTCTAAAGATCTTATGGAAACTCCAATCTTTGATGGGACCCCAAATCTTGAGCGGTTAGATCTCACAGGATGTACAAACCTACACCATGTCCATCAATCAATTGGAATTTTGAGTAAACTTGTTTTCTTGAGTTTGCAAAACTGTAGCAGTCTGGTTGTCTTTGATTTTGGCTGTTACACTAATTTAAGTTCTCTGAAAGTTCTGGACCTCTCTGGTTGCGCAAAACTTGAAAAAATGCCAGATTTTACAAGGGCATTGAATCTCGAGTACCTTGATATTGATCAATGTACTAGCTTATCTACGGTTCATCCATCAATTGGGACTCGTACAAAGCTTAGATTCTTAAGTTGCAGAGACTGCACTAGTCTTGTGAGTATACCCTATCAGGTTTACACCATGCAATCTCTTATAACTCTAGATTTCCATGGCTGCTTTGAACTTAGAAAACTACCCCCAAGGTGGTCTTTATATTTTTCTACGAACTTTCCAGCTTTGATTCTTCTAGATTTAGGCTTTTGCAATCTAAGTGAAATACCCGTTTGTATTGGAGAGGTGAAGTGTTTAGAAAGACTAAATCTAGAGGGAAACAACTTTGTTTCATTACCTTCTACCATCGGGAGGCTTGAAAGGCTAGCATATTTAAACTTGGCGCATTGCCATGAGCTTCAATCTTTACGTGAGCTTCCGTATCCGCAGGCAAGTGATTCATCAGTGGGAAGGTATTTTGAAACGGCATCCGGATCCCGTGATCATAGGTCTGGATTATATATTTTTGATTGCCCCAAGCTGGCTGCTGCTAGGTTCTGGGAGACTGCATTTCGGTGGCTTGAAAGACTAATTGAGGAACCCCGACACTTCCGGTGTGGCTTTGACATTGTTATTCCTTGGGATTGGAAAATTATTGATTCTTCATCAAATCGTATTCTTCCTAGGTGGTTCAGACATCAATTTAACGAGGCTTGGTGGTTCAGACATCAATTTAACGAGGCTTCAGTAAAAAGGATAGAAGGTTTTGATGTGAATGACAACTGGAATGGTTTTGCCTTCTGTGTAGCATTTGAGATAAACAATCATATTGCGATGTCTGGTTCACCAGATTGGTTCTCCTTGTCACGACCACATCCTTTTTATCTTTCTTTTGAAAGTGAATTCACGGAAGAATGCTTTGATATGCCACTCAGTTTGGAACTGAACAAGATTGTTGGATCAAAATATCTTTGGATAATCTATATCTCTCGAGAGCATTGCCATTTTGTGAAAACAGGAGCGCGTATCACATTTAAAGCCCGCCCAGGTCTCATGATGAAAGAATGGGGGTTACGCATGGTAGTCGAGGAAGACGCGGATGCAGAAGAAGTCCCCTTTGTCATTAATAATGTAAAAGAAAGCAGCTTGTGTCCTGAAATCCAGCTTCCCTACAATTGGTTGGTTACTAAGGAAGAGGAAGACGAGAATCGTGGAGCCAAGGGCAAAGAAAATACAGCCTTCCTTCACTTAGGTCAGCCGTAG 3585 0.4017 MRRNNIEDRLLSWRSKLLRSFRALLGCGPSFGPRPLDQGGKASSSSGLNSLDQGFNSIQSSTSSPRICKYDVFISFRGSDTRNSFVDHLFAHLSRKGLFAFKDDKRLGKGEPIKSQLLQAIEDSRVSIVVFSPDYASSTWCLDEMASINACRKNLKQTVFPIFYDVDPSHVRKQNGVYEDAFLLHTKRFEQDEAKVDRWEEAMSDLAGLAGWDVRNKPEFEEIEKILREVIKTLGHKFSGFMHDVIGIQPHVATLESFLKLSSEEDNFRVLGIWGMSGIGKTTLATVLYDRISYQFDFCCFIEDVSKIYRDGGATDLQKHILRQTLKEEDLDKYDPLEISGIVTDRLHKIKVLVVLDNVNQLKQLQELAINPKLLRAGSRMIVATEDEHILKAYGADKVYKAQLMNDNDACQLLCRKAFKSDDSSSNFVELIPEIVKYAKGLPLVISVVGSFLCTRDAPHWIDALDRLKNNPDKDIMDVLRLSFDGLQHEEKEIFLHIACFFKGEGVDYVKRILDACGLHPHIGIQRLIETSLIIIKNEKIHMHEMLQELGKHIVRQQFPQEPGSWSRLWRYLDFHHVSMTKTGTDKVKAIVLDQKDVSECPQAIAGASAEGLSKMTSLRLLILNHMNFSGDLNFLPNSLQCLMWRDYPFTSLPSNFEPYGLVELNMRNSSIQRLWDGRKDLPFLKRIDLSNSKDLMETPIFDGTPNLERLDLTGCTNLHHVHQSIGILSKLVFLSLQNCSSLVVFDFGCYTNLSSLKVLDLSGCAKLEKMPDFTRALNLEYLDIDQCTSLSTVHPSIGTRTKLRFLSCRDCTSLVSIPYQVYTMQSLITLDFHGCFELRKLPPRWSLYFSTNFPALILLDLGFCNLSEIPVCIGEVKCLERLNLEGNNFVSLPSTIGRLERLAYLNLAHCHELQSLRELPYPQASDSSVGRYFETASGSRDHRSGLYIFDCPKLAAARFWETAFRWLERLIEEPRHFRCGFDIVIPWDWKIIDSSSNRILPRWFRHQFNEAWWFRHQFNEASVKRIEGFDVNDNWNGFAFCVAFEINNHIAMSGSPDWFSLSRPHPFYLSFESEFTEECFDMPLSLELNKIVGSKYLWIIYISREHCHFVKTGARITFKARPGLMMKEWGLRMVVEEDADAEEVPFVINNVKESSLCPEIQLPYNWLVTKEEEDENRGAKGKENTAFLHLGQP 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1785g00002 1194 Gene3D Ribonuclease Inhibitor 847 939 IPR032675 -
Gabi1785g00002 1194 Gene3D Ribonuclease Inhibitor 747 846 IPR032675 -
Gabi1785g00002 1194 SUPERFAMILY L domain-like 558 918 - -
Gabi1785g00002 1194 SMART till_3 69 209 IPR000157 GO:0007165
Gabi1785g00002 1194 Pfam NB-ARC domain 261 472 IPR002182 GO:0043531
Gabi1785g00002 1194 FunFam Disease resistance protein (TIR-NBS-LRR class) 66 236 - -
Gabi1785g00002 1194 SUPERFAMILY Toll/Interleukin receptor TIR domain 60 212 IPR035897 -
Gabi1785g00002 1194 Gene3D - 67 240 IPR035897 -
Gabi1785g00002 1194 ProSiteProfiles TIR domain profile. 68 234 IPR000157 GO:0007165
Gabi1785g00002 1194 Gene3D - 405 488 IPR042197 -
Gabi1785g00002 1194 Pfam Leucine Rich Repeat 662 678 IPR011713 -
Gabi1785g00002 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 498 IPR027417 -
Gabi1785g00002 1194 SUPERFAMILY "Winged helix" DNA-binding domain 475 576 IPR036390 -
Gabi1785g00002 1194 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 70 743 IPR044974 GO:0006952
Gabi1785g00002 1194 Gene3D Ribonuclease Inhibitor 570 746 IPR032675 -
Gabi1785g00002 1194 Pfam TIR domain 69 236 IPR000157 GO:0007165
Gabi1785g00002 1194 Gene3D - 241 398 IPR027417 -
Gabi1785g00002 1194 PRINTS Disease resistance protein signature 346 360 - -
Gabi1785g00002 1194 PRINTS Disease resistance protein signature 439 453 - -
Gabi1785g00002 1194 PRINTS Disease resistance protein signature 752 768 - -
Gabi1785g00002 1194 PRINTS Disease resistance protein signature 270 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1785g00002 Gabi-Chr1785 19559 26834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1785g00002 750 915 WRKY Transcription Factor Family AT4G12020 35.503 4.93e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1785g00002 - - vvo:131643801 1295.03